BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] (175 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] 360 e-100 gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] 135 2e-32 gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] 135 2e-32 gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] 135 2e-32 gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] 135 2e-32 gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens] 98 3e-21 gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens] 98 3e-21 gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens] 98 3e-21 gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens] 98 3e-21 gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] 46 2e-05 gi|62244004 modulator of estrogen induced transcription isoform ... 28 4.1 gi|63176611 modulator of estrogen induced transcription isoform ... 28 4.1 gi|114688046 TBC1 domain family, member 4 [Homo sapiens] 27 9.0 >gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] Length = 175 Score = 360 bits (923), Expect = e-100 Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL 60 METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL Sbjct: 1 METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL 60 Query: 61 VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR 120 VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR Sbjct: 61 VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR 120 Query: 121 VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK 175 VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK Sbjct: 121 VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK 175 >gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] Length = 236 Score = 135 bits (340), Expect = 2e-32 Identities = 69/81 (85%), Positives = 70/81 (86%) Query: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143 SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A Sbjct: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72 Query: 144 VHGAQKACHRKQLFQTSPVKV 164 H AQKAC RKQLFQ SPVKV Sbjct: 73 AHRAQKACDRKQLFQKSPVKV 93 >gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] Length = 284 Score = 135 bits (340), Expect = 2e-32 Identities = 69/81 (85%), Positives = 70/81 (86%) Query: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143 SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A Sbjct: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72 Query: 144 VHGAQKACHRKQLFQTSPVKV 164 H AQKAC RKQLFQ SPVKV Sbjct: 73 AHRAQKACDRKQLFQKSPVKV 93 >gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] Length = 251 Score = 135 bits (340), Expect = 2e-32 Identities = 69/81 (85%), Positives = 70/81 (86%) Query: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143 SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A Sbjct: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72 Query: 144 VHGAQKACHRKQLFQTSPVKV 164 H AQKAC RKQLFQ SPVKV Sbjct: 73 AHRAQKACDRKQLFQKSPVKV 93 >gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] Length = 166 Score = 135 bits (340), Expect = 2e-32 Identities = 69/81 (85%), Positives = 70/81 (86%) Query: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143 SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A Sbjct: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72 Query: 144 VHGAQKACHRKQLFQTSPVKV 164 H AQKAC RKQLFQ SPVKV Sbjct: 73 AHRAQKACDRKQLFQKSPVKV 93 >gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens] Length = 261 Score = 98.2 bits (243), Expect = 3e-21 Identities = 50/60 (83%), Positives = 50/60 (83%) Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164 SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV Sbjct: 11 SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70 >gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens] Length = 116 Score = 98.2 bits (243), Expect = 3e-21 Identities = 50/60 (83%), Positives = 50/60 (83%) Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164 SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV Sbjct: 11 SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70 >gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens] Length = 143 Score = 98.2 bits (243), Expect = 3e-21 Identities = 50/60 (83%), Positives = 50/60 (83%) Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164 SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV Sbjct: 11 SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70 >gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens] Length = 228 Score = 98.2 bits (243), Expect = 3e-21 Identities = 50/60 (83%), Positives = 50/60 (83%) Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164 SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV Sbjct: 11 SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70 >gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] Length = 236 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/30 (70%), Positives = 24/30 (80%) Query: 74 NMMTHCSPGWSDKTLLVWELSSGPTADALH 103 +++ P SDKTLLVWELSSGPTADALH Sbjct: 3 DLLPFAVPTKSDKTLLVWELSSGPTADALH 32 >gi|62244004 modulator of estrogen induced transcription isoform b [Homo sapiens] Length = 1016 Score = 28.1 bits (61), Expect = 4.1 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 77 THCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVI 136 T S G S K + V LSS A L F ++ + S +V NA + YG++ Sbjct: 357 TSGSSGSSTKNIWVSGLSSNTKA----ADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIV 412 Query: 137 KFYSAMAVHGAQKACHRKQL 156 S+ V HR +L Sbjct: 413 TMSSSTEVSRCIAHLHRTEL 432 >gi|63176611 modulator of estrogen induced transcription isoform a [Homo sapiens] Length = 1034 Score = 28.1 bits (61), Expect = 4.1 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 77 THCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVI 136 T S G S K + V LSS A L F ++ + S +V NA + YG++ Sbjct: 375 TSGSSGSSTKNIWVSGLSSNTKA----ADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIV 430 Query: 137 KFYSAMAVHGAQKACHRKQL 156 S+ V HR +L Sbjct: 431 TMSSSTEVSRCIAHLHRTEL 450 >gi|114688046 TBC1 domain family, member 4 [Homo sapiens] Length = 1298 Score = 26.9 bits (58), Expect = 9.0 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 16/90 (17%) Query: 64 YVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFP 123 +V+ F C+ PG S V++ +S D + ++L QAFS L S + Sbjct: 394 HVDHFGFICRESP---EPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKT-- 448 Query: 124 NAAVAHSGFYGVIKFYSAMAVHGAQKACHR 153 IK A +H K C R Sbjct: 449 -----------QIKLCEACPMHSLHKLCER 467 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.131 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,278,335 Number of Sequences: 37866 Number of extensions: 234876 Number of successful extensions: 508 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 498 Number of HSP's gapped (non-prelim): 13 length of query: 175 length of database: 18,247,518 effective HSP length: 95 effective length of query: 80 effective length of database: 14,650,248 effective search space: 1172019840 effective search space used: 1172019840 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.