Search of human proteins with 239745785

Search of human proteins with 239745785

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]          360   e-100
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    135   2e-32
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    135   2e-32
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   135   2e-32
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   135   2e-32
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                    98   3e-21
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                    98   3e-21
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                    98   3e-21
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                    98   3e-21
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]        46   2e-05
gi|62244004 modulator of estrogen induced transcription isoform ...    28   4.1  
gi|63176611 modulator of estrogen induced transcription isoform ...    28   4.1  
gi|114688046 TBC1 domain family, member 4 [Homo sapiens]               27   9.0  

>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score =  360 bits (923), Expect = e-100
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL 60
           METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL
Sbjct: 1   METSARQRYTIQACGSTRGLRSFWAKAEEAAAAPEKCIWMKAQADKSGGVTNLGLFRSVL 60

Query: 61  VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR 120
           VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR
Sbjct: 61  VTVYVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVR 120

Query: 121 VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK 175
           VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK
Sbjct: 121 VFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKVAPNMEFLAPLK 175


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  135 bits (340), Expect = 2e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72

Query: 144 VHGAQKACHRKQLFQTSPVKV 164
            H AQKAC RKQLFQ SPVKV
Sbjct: 73  AHRAQKACDRKQLFQKSPVKV 93


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  135 bits (340), Expect = 2e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72

Query: 144 VHGAQKACHRKQLFQTSPVKV 164
            H AQKAC RKQLFQ SPVKV
Sbjct: 73  AHRAQKACDRKQLFQKSPVKV 93


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  135 bits (340), Expect = 2e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72

Query: 144 VHGAQKACHRKQLFQTSPVKV 164
            H AQKAC RKQLFQ SPVKV
Sbjct: 73  AHRAQKACDRKQLFQKSPVKV 93


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  135 bits (340), Expect = 2e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72

Query: 144 VHGAQKACHRKQLFQTSPVKV 164
            H AQKAC RKQLFQ SPVKV
Sbjct: 73  AHRAQKACDRKQLFQKSPVKV 93


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70


>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 74  NMMTHCSPGWSDKTLLVWELSSGPTADALH 103
           +++    P  SDKTLLVWELSSGPTADALH
Sbjct: 3   DLLPFAVPTKSDKTLLVWELSSGPTADALH 32


>gi|62244004 modulator of estrogen induced transcription isoform b
           [Homo sapiens]
          Length = 1016

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 77  THCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVI 136
           T  S G S K + V  LSS   A      L   F ++  + S +V  NA    +  YG++
Sbjct: 357 TSGSSGSSTKNIWVSGLSSNTKA----ADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIV 412

Query: 137 KFYSAMAVHGAQKACHRKQL 156
              S+  V       HR +L
Sbjct: 413 TMSSSTEVSRCIAHLHRTEL 432


>gi|63176611 modulator of estrogen induced transcription isoform a
           [Homo sapiens]
          Length = 1034

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 77  THCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVI 136
           T  S G S K + V  LSS   A      L   F ++  + S +V  NA    +  YG++
Sbjct: 375 TSGSSGSSTKNIWVSGLSSNTKA----ADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIV 430

Query: 137 KFYSAMAVHGAQKACHRKQL 156
              S+  V       HR +L
Sbjct: 431 TMSSSTEVSRCIAHLHRTEL 450


>gi|114688046 TBC1 domain family, member 4 [Homo sapiens]
          Length = 1298

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 64  YVEDFRACCKNMMTHCSPGWSDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFP 123
           +V+ F   C+       PG S     V++ +S    D + ++L QAFS    L S +   
Sbjct: 394 HVDHFGFICRESP---EPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKT-- 448

Query: 124 NAAVAHSGFYGVIKFYSAMAVHGAQKACHR 153
                       IK   A  +H   K C R
Sbjct: 449 -----------QIKLCEACPMHSLHKLCER 467


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.131    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,278,335
Number of Sequences: 37866
Number of extensions: 234876
Number of successful extensions: 508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 13
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.