Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens] 379 e-106
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ... 379 e-106
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ... 258 2e-69
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 162 2e-40
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 162 2e-40
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 162 2e-40
gi|223890243 ribosomal protein L10 [Homo sapiens] 96 2e-20
gi|18152783 ribosomal protein L10-like protein [Homo sapiens] 94 7e-20
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens] 88 5e-18
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens] 88 5e-18
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap... 88 5e-18
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 84 5e-17
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 84 5e-17
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 84 5e-17
gi|170763517 transforming, acidic coiled-coil containing protein... 32 0.41
gi|226246618 transforming, acidic coiled-coil containing protein... 32 0.41
gi|169214889 PREDICTED: similar to hCG1790590 [Homo sapiens] 28 3.5
gi|169215116 PREDICTED: hypothetical protein [Homo sapiens] 28 3.5
gi|169214611 PREDICTED: similar to hCG1790590 [Homo sapiens] 28 3.5
>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
Length = 186
Score = 379 bits (974), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF 60
MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF
Sbjct: 1 MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF 60
Query: 61 SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR 120
SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR
Sbjct: 61 SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR 120
Query: 121 LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF 180
LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF
Sbjct: 121 LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF 180
Query: 181 TKFKVD 186
TKFKVD
Sbjct: 181 TKFKVD 186
>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
Length = 186
Score = 379 bits (974), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF 60
MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF
Sbjct: 1 MVIISTGITIEGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVPF 60
Query: 61 SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR 120
SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR
Sbjct: 61 SGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCR 120
Query: 121 LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF 180
LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF
Sbjct: 121 LQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCF 180
Query: 181 TKFKVD 186
TKFKVD
Sbjct: 181 TKFKVD 186
>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
Length = 180
Score = 258 bits (659), Expect = 2e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 63 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 122
AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ
Sbjct: 57 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 116
Query: 123 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 182
TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK
Sbjct: 117 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 176
Query: 183 FKVD 186
FKVD
Sbjct: 177 FKVD 180
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 162 bits (409), Expect = 2e-40
Identities = 90/131 (68%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Query: 59 PFSGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQ 118
P E E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+
Sbjct: 151 PQPSKEWIEQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPR 210
Query: 119 CRLQT---DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRL+T + GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI IS
Sbjct: 211 CRLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHIS 269
Query: 176 KKWCFTKFKVD 186
KKW FTKF VD
Sbjct: 270 KKWGFTKFNVD 280
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 162 bits (409), Expect = 2e-40
Identities = 90/131 (68%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Query: 59 PFSGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQ 118
P E E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+
Sbjct: 28 PQPSKEWIEQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPR 87
Query: 119 CRLQT---DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRL+T + GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI IS
Sbjct: 88 CRLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHIS 146
Query: 176 KKWCFTKFKVD 186
KKW FTKF VD
Sbjct: 147 KKWGFTKFNVD 157
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 162 bits (409), Expect = 2e-40
Identities = 90/131 (68%), Positives = 97/131 (74%), Gaps = 4/131 (3%)
Query: 59 PFSGAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQ 118
P E E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+
Sbjct: 28 PQPSKEWIEQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPR 87
Query: 119 CRLQT---DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRL+T + GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI IS
Sbjct: 88 CRLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHIS 146
Query: 176 KKWCFTKFKVD 186
KKW FTKF VD
Sbjct: 147 KKWGFTKFNVD 157
>gi|223890243 ribosomal protein L10 [Homo sapiens]
Length = 214
Score = 95.5 bits (236), Expect = 2e-20
Identities = 52/70 (74%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
RLQT + GKPQGTVARVHIGQVIMS+RTKLQNK+ VIE L RAKFK G QKI ISK
Sbjct: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
Query: 177 KWCFTKFKVD 186
KW FTKF D
Sbjct: 170 KWGFTKFNAD 179
>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
Length = 214
Score = 94.0 bits (232), Expect = 7e-20
Identities = 51/70 (72%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
RLQT + GKPQGTVARVHIGQVIMS+RTKLQN++ VIE L RAKFK G QKI ISK
Sbjct: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
Query: 177 KWCFTKFKVD 186
KW FTKF D
Sbjct: 170 KWGFTKFNAD 179
>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 119 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 176 KKWCFTKFKVD 186
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 119 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 176 KKWCFTKFKVD 186
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 119 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 175
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 176 KKWCFTKFKVD 186
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|170763517 transforming, acidic coiled-coil containing protein 1
isoform 1 [Homo sapiens]
Length = 805
Score = 31.6 bits (70), Expect = 0.41
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 11 EGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVP 59
+G +SQ SS +Q+ SP+F+P G L SP + G +HF P
Sbjct: 374 DGPLSQTSSKP---DPSQWESPSFNPFGSHSVLQNSPPLSSEGSYHFDP 419
>gi|226246618 transforming, acidic coiled-coil containing protein 1
isoform 3 [Homo sapiens]
Length = 610
Score = 31.6 bits (70), Expect = 0.41
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 11 EGKVSQVSSGEIILGTTQFMSPAFHPRGVAGPLNTSPDSTISGLFHFVP 59
+G +SQ SS +Q+ SP+F+P G L SP + G +HF P
Sbjct: 179 DGPLSQTSSKP---DPSQWESPSFNPFGSHSVLQNSPPLSSEGSYHFDP 224
>gi|169214889 PREDICTED: similar to hCG1790590 [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 30 MSPAFHPRGVAGPLNTSPDSTISGLFHFVPFSGAE 64
M PA HP G+AGPL T ++ + +G +
Sbjct: 92 MEPALHPWGLAGPLVTISSGNVTNILILTVAAGVK 126
>gi|169215116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 30 MSPAFHPRGVAGPLNTSPDSTISGLFHFVPFSGAE 64
M PA HP G+AGPL T ++ + +G +
Sbjct: 92 MEPALHPWGLAGPLVTISSGNVTNILILTVAAGVK 126
>gi|169214611 PREDICTED: similar to hCG1790590 [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 30 MSPAFHPRGVAGPLNTSPDSTISGLFHFVPFSGAE 64
M PA HP G+AGPL T ++ + +G +
Sbjct: 92 MEPALHPWGLAGPLVTISSGNVTNILILTVAAGVK 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,468,331
Number of Sequences: 37866
Number of extensions: 265341
Number of successful extensions: 775
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.