Guide to the Human Genome
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Name: LOC645605 Sequence: fasta or formatted (194aa) NCBI GI: 169214611
Description:

PREDICTED: similar to hCG1790590

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt mRNA [194aa] PREDICTED: similar to hCG1790590
alt mRNA [194aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         13           2
 C cysteine            4.6          9           2
 D aspartate           2.6          5           1
 E glutamate           8.2         16           3
 F phenylalanine       3.1          6           2
 G glycine             9.3         18           2
 H histidine           3.1          6           1
 I isoleucine          6.2         12           1
 K lysine              4.1          8           1
 L leucine            12.4         24           1
 M methionine          1.5          3           1
 N asparagine          2.6          5           1
 P proline             4.1          8           1
 Q glutamine           2.1          4           1
 R arginine            5.7         11           2
 S serine              7.2         14           2
 T threonine           8.8         17           2
 V valine              5.7         11           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1790590 
LOC645605             1.000   PREDICTED: similar to hCG1790590 
LOC645605             1.000   PREDICTED: hypothetical protein 
FAM38A                0.222   family with sequence similarity 38, member A 
FAM38B                0.186   hypothetical protein LOC63895 
RNF186                0.027   ring finger protein 186 
FXR1                  0.016   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.016   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.016   fragile X mental retardation-related protein 1 isofo...
LOC728503             0.014   PREDICTED: hypothetical protein 
LOC728503             0.014   PREDICTED: hypothetical protein 
LOC728503             0.014   PREDICTED: hypothetical protein 
RICTOR                0.011   rapamycin-insensitive companion of mTOR 
MCF2L                 0.011   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.011   MCF.2 cell line derived transforming sequence-like ...
KRT28                 0.008   keratin 25D 
LOC100293009          0.008   PREDICTED: similar to hCG1643102 
LOC100288336          0.008   PREDICTED: hypothetical protein XP_002343795 
LOC100287009          0.008   PREDICTED: hypothetical protein XP_002343545 
INHBC                 0.008   inhibin beta C chain preproprotein 
C21orf33              0.008   es1 protein isoform Ib precursor 
C16orf78              0.008   hypothetical protein LOC123970 
ANKRD58               0.005   ankyrin repeat domain 58 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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