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Search of human proteins with 239745627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745627 PREDICTED: hypothetical protein XP_002344146
isoform 1 [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo sap... 248 6e-67
gi|239751134 PREDICTED: hypothetical protein XP_002347721 isofor... 248 6e-67
gi|239745627 PREDICTED: hypothetical protein XP_002344146 isofor... 248 6e-67
gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sap... 43 6e-05
gi|239751136 PREDICTED: hypothetical protein XP_002347722 isofor... 43 6e-05
gi|239745629 PREDICTED: hypothetical protein XP_002344147 isofor... 43 6e-05
gi|114326552 MON2 homolog [Homo sapiens] 27 3.5
gi|23510413 sorting nexin 26 [Homo sapiens] 27 4.5
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 26 5.9
gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7
gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7
gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens] 26 7.7
gi|118722353 XK-related protein 5a [Homo sapiens] 26 7.7
>gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 115
Score = 248 bits (634), Expect = 6e-67
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
>gi|239751134 PREDICTED: hypothetical protein XP_002347721 isoform 1
[Homo sapiens]
Length = 115
Score = 248 bits (634), Expect = 6e-67
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
>gi|239745627 PREDICTED: hypothetical protein XP_002344146 isoform 1
[Homo sapiens]
Length = 115
Score = 248 bits (634), Expect = 6e-67
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW
Sbjct: 1 MCPCLCHRFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCW 60
Query: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV
Sbjct: 61 RICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLLTLLQAIPRVIMAIRQCFGV 115
>gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 158
Score = 42.7 bits (99), Expect = 6e-05
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
C C RFGGRLP+ R +A +PYWVP LR ++Q
Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
>gi|239751136 PREDICTED: hypothetical protein XP_002347722 isoform 2
[Homo sapiens]
Length = 158
Score = 42.7 bits (99), Expect = 6e-05
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
C C RFGGRLP+ R +A +PYWVP LR ++Q
Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
>gi|239745629 PREDICTED: hypothetical protein XP_002344147 isoform 2
[Homo sapiens]
Length = 158
Score = 42.7 bits (99), Expect = 6e-05
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 4 CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35
C C RFGGRLP+ R +A +PYWVP LR ++Q
Sbjct: 78 CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
>gi|114326552 MON2 homolog [Homo sapiens]
Length = 1717
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 8 RFGGRLPMPRDQAVMPYWVPQVLRSQQQIVRRQQSLKGIQAPLLDACCWHNCWRI----- 62
R G+ P+PR Q V +++ + + SLK Q +D W +
Sbjct: 1627 RLSGKCPLPRQQ------VTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLV 1680
Query: 63 ----CGDECLLSKFQQLQAPYQDQLPAPAARL 90
C + S ++ P++D + PA+R+
Sbjct: 1681 ECITCSSSEVCSALKEALVPFKDFMQPPASRV 1712
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 43 LKGIQAPLLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLG 94
L+G +APL DAC C ++ G + L + P P P + L P G
Sbjct: 680 LRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLP-----PPPLSLLRPGG 726
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 45 GIQAPLLDACCWHNCWRICGDECLLSKFQQ 74
G L CC H C + C +E L ++ +Q
Sbjct: 2078 GCDDDLPSLCCMHYCCKSCWNEYLTTRIEQ 2107
>gi|239757770 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
Length = 367
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79
WH C G +CL +KF PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367
>gi|169216202 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
Length = 367
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79
WH C G +CL +KF PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367
>gi|169216811 PREDICTED: melanoma antigen family B, 5 [Homo sapiens]
Length = 367
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 56 WHNCWRICGDECLLSKFQQLQAPY 79
WH C G +CL +KF PY
Sbjct: 347 WHYC---SGQDCLRAKFSSFSQPY 367
>gi|118722353 XK-related protein 5a [Homo sapiens]
Length = 339
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 50 LLDACCWHNCWRICGDECLLSKFQQLQAPYQDQLPAPAARLLPLGLL-TLLQAIPRVIM 107
LL W W D L S ++L+AP++ L A L L LL LLQ P +++
Sbjct: 73 LLQLGVWKRHW----DAALTSLQKELEAPHRGWLQLQEADLSALRLLEALLQTGPHLLL 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.143 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,592,440
Number of Sequences: 37866
Number of extensions: 186859
Number of successful extensions: 592
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 13
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.