Search of human proteins with 239745304

Search of human proteins with 239745304

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745304 PREDICTED: hypothetical protein XP_002343433 [Homo
sapiens]
         (265 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756389 PREDICTED: hypothetical protein XP_002344912 [Homo ...   550   e-157
gi|239750906 PREDICTED: hypothetical protein XP_002347612 [Homo ...   550   e-157
gi|239745304 PREDICTED: hypothetical protein XP_002343433 [Homo ...   550   e-157
gi|19923479 suppressor of fused [Homo sapiens]                         37   0.018
gi|7706595 myozenin 2 [Homo sapiens]                                   28   8.3  
gi|93102367 ral guanine nucleotide dissociation stimulator-like ...    28   8.3  
gi|190014583 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...    28   8.3  

>gi|239756389 PREDICTED: hypothetical protein XP_002344912 [Homo
           sapiens]
          Length = 265

 Score =  550 bits (1417), Expect = e-157
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60
           MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI
Sbjct: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60

Query: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120
           NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE
Sbjct: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120

Query: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180
           VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP
Sbjct: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180

Query: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240
           VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT
Sbjct: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240

Query: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265
           RHIHQRQVDGMNIGPVQIGCLPGEC
Sbjct: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265


>gi|239750906 PREDICTED: hypothetical protein XP_002347612 [Homo
           sapiens]
          Length = 265

 Score =  550 bits (1417), Expect = e-157
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60
           MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI
Sbjct: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60

Query: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120
           NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE
Sbjct: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120

Query: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180
           VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP
Sbjct: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180

Query: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240
           VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT
Sbjct: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240

Query: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265
           RHIHQRQVDGMNIGPVQIGCLPGEC
Sbjct: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265


>gi|239745304 PREDICTED: hypothetical protein XP_002343433 [Homo
           sapiens]
          Length = 265

 Score =  550 bits (1417), Expect = e-157
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60
           MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI
Sbjct: 1   MTKRTTNRTQAKAASPTAMDTCEEPETEIHSDALSCHGPGMMWNRREGYLNSIVTDSIRI 60

Query: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120
           NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE
Sbjct: 61  NQFQSNRPGLIYLLKESTGLQYEFPCTDINKASWSCHTLKESIHLRSSYAALTWKGLLEE 120

Query: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180
           VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP
Sbjct: 121 VAIDGLVGCAQWVFGNEGIVAIVVVGGLVEEQAALGNLSLLVVFHMDDLGLPQRLPIVQP 180

Query: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240
           VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT
Sbjct: 181 VQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGEAIVLT 240

Query: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265
           RHIHQRQVDGMNIGPVQIGCLPGEC
Sbjct: 241 RHIHQRQVDGMNIGPVQIGCLPGEC 265


>gi|19923479 suppressor of fused [Homo sapiens]
          Length = 484

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 176 PIVQPVQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGE 235
           P +QPVQ  +GV T  ++  V   +L   Q  +  GIL+      IA    ++ + R+GE
Sbjct: 183 PQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGE 242

Query: 236 AIV-LTRHIHQR-----QVDGMNIGPVQIGC 260
            I  +  H+ +R     + DG N+  V   C
Sbjct: 243 TIFEIDPHLQERVDKGIETDGSNLSGVSAKC 273


>gi|7706595 myozenin 2 [Homo sapiens]
          Length = 264

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 224 AHHVLCNARQGEAIVLTRHIHQRQVDGMNIG 254
           +H+ +   R+ +A  + + +H   VDGM++G
Sbjct: 3   SHNTMMKQRKQQATAIMKEVHGNDVDGMDLG 33


>gi|93102367 ral guanine nucleotide dissociation stimulator-like 1
           [Homo sapiens]
          Length = 803

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 6   TNRTQAKAASPTAMDTCEEPETEIHSDALSC 36
           +N ++A+  S T MDT +EP+ ++   + SC
Sbjct: 596 SNHSEAEEGSITPMDTPDEPQKKLSESSSSC 626


>gi|190014583 UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase-like 2 [Homo sapiens]
          Length = 639

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 85  PCTDINKASWSCHTLKESIHLRS----SYAALTWKGLLEEVAIDGL-VGCAQWVFGNEGI 139
           PC+D  +  +  HT ++ IH  S     +A    + +L+    +GL +    W F   G+
Sbjct: 535 PCSDSRQQQYLQHTSRKEIHFGSPQHLCFAVRQEQVILQNCTEEGLAIHQQHWDFQENGM 594

Query: 140 VAIVVVGGLVEEQAALGNLSL 160
           +  ++ G  +E      N  L
Sbjct: 595 IVHILSGKCMEAVVQENNKDL 615


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,425,591
Number of Sequences: 37866
Number of extensions: 439047
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 8
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.