Guide to the Human Genome
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Search of human proteins with 239741902

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo
sapiens]
         (144 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753439 PREDICTED: hypothetical protein [Homo sapiens]           300   3e-82
gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]           300   3e-82
gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo ...   300   3e-82
gi|39979638 family with sequence similarity 5, member C [Homo sa...    32   0.18 
gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]           28   2.0  
gi|4557743 Mediterranean fever protein [Homo sapiens]                  28   2.7  
gi|189181654 deleted in azoospermia [Homo sapiens]                     28   2.7  
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]          28   2.7  
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    27   4.5  
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact...    27   5.9  
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    27   5.9  
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ...    27   5.9  
gi|229577000 ecotropic viral integration site 5-like isoform 1 [...    27   7.7  
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H...    27   7.7  
gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]          27   7.7  
gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]                27   7.7  
gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]          27   7.7  
gi|54292110 deleted in azoospermia 3 [Homo sapiens]                    27   7.7  
gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]          27   7.7  
gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]          27   7.7  

>gi|239753439 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score =  300 bits (768), Expect = 3e-82
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
           MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60

Query: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
           SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120

Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
           SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144


>gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score =  300 bits (768), Expect = 3e-82
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
           MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60

Query: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
           SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120

Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
           SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144


>gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo
           sapiens]
          Length = 144

 Score =  300 bits (768), Expect = 3e-82
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60
           MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA
Sbjct: 1   MSVKATETEQLKKGWAPSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAA 60

Query: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120
           SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG
Sbjct: 61  SQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKG 120

Query: 121 SQAGERLTPAVSFLPSHFSAASHQ 144
           SQAGERLTPAVSFLPSHFSAASHQ
Sbjct: 121 SQAGERLTPAVSFLPSHFSAASHQ 144


>gi|39979638 family with sequence similarity 5, member C [Homo
          sapiens]
          Length = 766

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 40 QSTPSASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLWQTLSDTCAEATWLLSGRG 97
          +S   A L S +++WEW A +   WVL     ++ H           +   WLLS +G
Sbjct: 4  RSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQH---------ATSPFDWLLSDKG 52


>gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]
          Length = 185

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 78  LWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQH 114
           +W  +        WL +  GL CW    G SR LA+H
Sbjct: 128 VWPGIHGALCAGRWLRTSSGLHCWAHLPG-SRLLARH 163


>gi|4557743 Mediterranean fever protein [Homo sapiens]
          Length = 781

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 44  SASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLWQTLS 83
           S S LSG   WE E     +W+L A C T   R+   TLS
Sbjct: 645 SPSFLSGRRYWEVEVGDKTAWILGA-CKTSISRKGNMTLS 683


>gi|189181654 deleted in azoospermia [Homo sapiens]
          Length = 744

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 10  QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
           Q +  W  P++  +LQ      P++    SA    TP++++    S     AAASQ WVL
Sbjct: 138 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 197



 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 10  QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
           Q +  W  P++  +LQ      P++    SA    TP++++    S     AAASQ WVL
Sbjct: 303 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 362



 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
          Length = 579

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 10  QLKKGWA-PSSSRHLQLWRHQKPLSS--PSAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
           Q +  W  P++  +LQ      P++    SA    TP++++    S     AAASQ WVL
Sbjct: 138 QFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVL 197



 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 16  APSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVSVWEWEAAASQ 62
           +PS SR     R Q P  SP+ +  + P+AS   G  + + E AA +
Sbjct: 517 SPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGK 563


>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
           RhoGEF isoform a [Homo sapiens]
          Length = 6620

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 77  RLWQTLSDTCAEATWLLSGRGLDCWEEYEGQS 108
           +L   LSD  A  TWL  GR L    +YE Q+
Sbjct: 725 QLLAELSDQAAAVTWLKDGRTLSPGPKYEVQA 756


>gi|148833506 obscurin, cytoskeletal calmodulin and
           titin-interacting RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 77  RLWQTLSDTCAEATWLLSGRGLDCWEEYEGQS 108
           +L   LSD  A  TWL  GR L    +YE Q+
Sbjct: 725 QLLAELSDQAAAVTWLKDGRTLSPGPKYEVQA 756


>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
            sapiens]
          Length = 2364

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 16   APSSSRHLQLWRHQKPLSSPSAKTQSTPSASLLSGVS-VWEWEA----AASQSW 64
            +P+S R  +     +  ++  A+TQ TPSA +   ++   EWEA    A+S+SW
Sbjct: 2169 SPTSDRKAKTALPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSRSW 2222


>gi|229577000 ecotropic viral integration site 5-like isoform 1
           [Homo sapiens]
          Length = 805

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)

Query: 88  EATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKGSQAGERLTPAVSFLPSHFSA 140
           E TW+L GR  + WEE+  +   L + +L+ KG             +P HF A
Sbjct: 84  EDTWILWGRIANEWEEWRRRKEKLLK-ELIRKG-------------IPHHFRA 122


>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
           sapiens]
          Length = 794

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)

Query: 88  EATWLLSGRGLDCWEEYEGQSRPLAQHQLVGKGSQAGERLTPAVSFLPSHFSA 140
           E TW+L GR  + WEE+  +   L + +L+ KG             +P HF A
Sbjct: 84  EDTWILWGRIANEWEEWRRRKEKLLK-ELIRKG-------------IPHHFRA 122


>gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]
          Length = 390

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]
          Length = 837

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 31  PLSSPSAKTQSTPSASLLSGVSVWEWEAAASQSWVLRAQCFTETHRRLW 79
           PL++    +    +A++++  + + +   A  SW+  A    E H R+W
Sbjct: 261 PLNTTKYNSALDTNATMINSFNKFPYPTQAELSWLTAASKHPEEHIRIW 309


>gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]
          Length = 558

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|54292110 deleted in azoospermia 3 [Homo sapiens]
          Length = 438

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]
          Length = 366

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


>gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]
          Length = 534

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 36 SAKTQSTPSASLLSGVSVWEWEAAASQSWVL 66
          SA    TP++++    S     AAASQ WVL
Sbjct: 2  SAANPETPNSTISREASTQSSSAAASQGWVL 32


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.122    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,125,122
Number of Sequences: 37866
Number of extensions: 261179
Number of successful extensions: 668
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 23
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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