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Search of human proteins with 239741108
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741108 PREDICTED: hypothetical protein XP_002342130 [Homo
sapiens]
(86 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752782 PREDICTED: hypothetical protein [Homo sapiens] 174 1e-44
gi|239747284 PREDICTED: hypothetical protein XP_002346422 [Homo ... 174 1e-44
gi|239741108 PREDICTED: hypothetical protein XP_002342130 [Homo ... 174 1e-44
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 29 0.91
gi|4504545 5-hydroxytryptamine (serotonin) receptor 6 [Homo sapi... 27 4.5
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 27 4.5
gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b ... 26 7.7
gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a ... 26 7.7
gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c ... 26 7.7
>gi|239752782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 174 bits (441), Expect = 1e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86
>gi|239747284 PREDICTED: hypothetical protein XP_002346422 [Homo
sapiens]
Length = 86
Score = 174 bits (441), Expect = 1e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86
>gi|239741108 PREDICTED: hypothetical protein XP_002342130 [Homo
sapiens]
Length = 86
Score = 174 bits (441), Expect = 1e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1 MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 33 WRARTLLMSGDLERPPSASPKALVIANWMARPVMVPVDSGWIRR 76
WRA L + GD ERP LV W ARP GW RR
Sbjct: 221 WRAEHLRVLGDSERP------LLVQELWRARP-------GWARR 251
>gi|4504545 5-hydroxytryptamine (serotonin) receptor 6 [Homo
sapiens]
Length = 440
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 48 PSASPKALVIANWMARPVMVPVDSGWIRRTACSSAAL 84
P P A W A P P SGW+ C AL
Sbjct: 3 PEPGPTANSTPAWGAGPPSAPGGSGWVAAALCVVIAL 39
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 AHNSEREPPNS--SILAGWRARTLLMSGDLERPPSASPKALVIANWMARPVMVPVDSGWI 74
A S +P S +IL G+ ++ + +E P +AS + W+ +P DS W
Sbjct: 274 ARLSVTDPAESIPTILDGFHSQEVWAGHTVELPCTASGYPIPAIRWLKDGRPLPADSRWT 333
Query: 75 RR 76
+R
Sbjct: 334 KR 335
>gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
[Homo sapiens]
Length = 613
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 20 SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
S +P SS +AG R RTL S + E RPP SP
Sbjct: 499 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540
>gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a
[Homo sapiens]
Length = 667
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 20 SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
S +P SS +AG R RTL S + E RPP SP
Sbjct: 553 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 594
>gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c
[Homo sapiens]
Length = 669
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 20 SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
S +P SS +AG R RTL S + E RPP SP
Sbjct: 555 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,502,361
Number of Sequences: 37866
Number of extensions: 128100
Number of successful extensions: 297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.