Guide to the Human Genome
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Search of human proteins with 239740811

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740811 PREDICTED: hypothetical protein [Homo sapiens]
         (110 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754293 PREDICTED: hypothetical protein [Homo sapiens]           225   5e-60
gi|239748830 PREDICTED: hypothetical protein XP_002346814 [Homo ...   225   5e-60
gi|239742861 PREDICTED: hypothetical protein XP_002342683 [Homo ...   225   5e-60
gi|239740877 PREDICTED: hypothetical protein XP_002344062 [Homo ...   225   5e-60
gi|239740811 PREDICTED: hypothetical protein [Homo sapiens]           225   5e-60
gi|239740707 PREDICTED: hypothetical protein [Homo sapiens]           225   5e-60
gi|239513969 PREDICTED: hypothetical protein [Homo sapiens]           225   5e-60
gi|148839342 ATP-grasp domain containing 1 [Homo sapiens]              32   0.14 
gi|27477127 keratin 82 [Homo sapiens]                                  27   3.5  
gi|157653329 procollagen C-endopeptidase enhancer [Homo sapiens]       27   4.6  
gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo ...    26   6.0  
gi|13376247 zinc finger protein 672 [Homo sapiens]                     26   6.0  
gi|227908867 protein arginine methyltransferase 6 [Homo sapiens]       26   7.8  
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  

>gi|239754293 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239748830 PREDICTED: hypothetical protein XP_002346814 [Homo
           sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239742861 PREDICTED: hypothetical protein XP_002342683 [Homo
           sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239740877 PREDICTED: hypothetical protein XP_002344062 [Homo
           sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239740811 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239740707 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|239513969 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score =  225 bits (574), Expect = 5e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
           MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1   MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60

Query: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
           VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61  VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110


>gi|148839342 ATP-grasp domain containing 1 [Homo sapiens]
          Length = 827

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 18  GVRPLAHFAEAGRGTKRLISQCGAG-----APRGYRLKAAWRAPAGLTVYTEIELRVEVR 72
           G RPL H     R  +  ++QCG G     A    R+KAA  A     +  E  L  E R
Sbjct: 256 GDRPLRHHNSLPRTLEVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQR 315

Query: 73  PGRR 76
            GRR
Sbjct: 316 GGRR 319


>gi|27477127 keratin 82 [Homo sapiens]
          Length = 513

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 4  ISQAPSRA------RGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPR-GYRLKAAWRAP 56
          +S+ P R       R   C G R L +    G G  R+ S+CG   P  GYRL A     
Sbjct: 33 VSKGPCRPGGGRGLRALGCLGSRSLCN---VGFGRPRVASRCGGTLPGFGYRLGATCGPS 89

Query: 57 AGLTVYT 63
          A +T  T
Sbjct: 90 ACITPVT 96


>gi|157653329 procollagen C-endopeptidase enhancer [Homo sapiens]
          Length = 449

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 13  GQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAG 58
           G+FC   RP    A   + T R+ +  G G  RG+ L  + RA +G
Sbjct: 109 GRFCGTFRPAPLVAPGNQVTLRMTTDEGTGG-RGFLLWYSGRATSG 153


>gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo
           sapiens]
          Length = 559

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 36  ISQCGAGAPRGYRLKAAWRAPAG 58
           + +CGAG PRG ++      PAG
Sbjct: 320 MQECGAGTPRGKKMADPEMLPAG 342


>gi|13376247 zinc finger protein 672 [Homo sapiens]
          Length = 452

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 15  FCAGVRPLAHF-AEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLTVYTEIELRVEVRP 73
           FC     L H  A  G G  R + +CG    R   L+A  R  AG T+Y   E     R 
Sbjct: 23  FCYSSVLLRHERAHGGDGRFRCL-ECGERCARAADLRAHRRTHAGQTLYICSECGQSFRH 81

Query: 74  GRRFPRSLA--QQQCTGSLGQALSARILHEPTL 104
             R    L   +Q+C     +    R  H P L
Sbjct: 82  SGRLDLHLGAHRQRCRTCPCRTCGRRFPHLPAL 114


>gi|227908867 protein arginine methyltransferase 6 [Homo sapiens]
          Length = 375

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 27  EAGRGTKRLISQCG-AGAPRGYRLKAA--WRAPAGLTVYTEIELRVEVRPGRRFPRSLAQ 83
           + G GT  L   C  AGA R Y ++A+  W+    +  +  +E RV V PG      L  
Sbjct: 88  DVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVEL-P 146

Query: 84  QQCTGSLGQALSARILHEPTL 104
           +Q    + + +   +LHE  L
Sbjct: 147 EQVDAIVSEWMGYGLLHESML 167


>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 301

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 17  AGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWR--APAGLT 60
           A  R  AH A  GRG  +L+ Q    A +G + +   R  APAGLT
Sbjct: 83  APARTRAH-AHKGRGAGKLVIQARTRAQKGGKGEETRRGPAPAGLT 127


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,447,980
Number of Sequences: 37866
Number of extensions: 196576
Number of successful extensions: 395
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 14
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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