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Search of human proteins with 239740707
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740707 PREDICTED: hypothetical protein [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754293 PREDICTED: hypothetical protein [Homo sapiens] 225 5e-60
gi|239748830 PREDICTED: hypothetical protein XP_002346814 [Homo ... 225 5e-60
gi|239742861 PREDICTED: hypothetical protein XP_002342683 [Homo ... 225 5e-60
gi|239740877 PREDICTED: hypothetical protein XP_002344062 [Homo ... 225 5e-60
gi|239740811 PREDICTED: hypothetical protein [Homo sapiens] 225 5e-60
gi|239740707 PREDICTED: hypothetical protein [Homo sapiens] 225 5e-60
gi|239513969 PREDICTED: hypothetical protein [Homo sapiens] 225 5e-60
gi|148839342 ATP-grasp domain containing 1 [Homo sapiens] 32 0.14
gi|27477127 keratin 82 [Homo sapiens] 27 3.5
gi|157653329 procollagen C-endopeptidase enhancer [Homo sapiens] 27 4.6
gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo ... 26 6.0
gi|13376247 zinc finger protein 672 [Homo sapiens] 26 6.0
gi|227908867 protein arginine methyltransferase 6 [Homo sapiens] 26 7.8
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
>gi|239754293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239748830 PREDICTED: hypothetical protein XP_002346814 [Homo
sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239742861 PREDICTED: hypothetical protein XP_002342683 [Homo
sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239740877 PREDICTED: hypothetical protein XP_002344062 [Homo
sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239740811 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239740707 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|239513969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 225 bits (574), Expect = 5e-60
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT
Sbjct: 1 MLTISQAPSRARGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLT 60
Query: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC
Sbjct: 61 VYTEIELRVEVRPGRRFPRSLAQQQCTGSLGQALSARILHEPTLDHRGSC 110
>gi|148839342 ATP-grasp domain containing 1 [Homo sapiens]
Length = 827
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 18 GVRPLAHFAEAGRGTKRLISQCGAG-----APRGYRLKAAWRAPAGLTVYTEIELRVEVR 72
G RPL H R + ++QCG G A R+KAA A + E L E R
Sbjct: 256 GDRPLRHHNSLPRTLEVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQR 315
Query: 73 PGRR 76
GRR
Sbjct: 316 GGRR 319
>gi|27477127 keratin 82 [Homo sapiens]
Length = 513
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 4 ISQAPSRA------RGQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPR-GYRLKAAWRAP 56
+S+ P R R C G R L + G G R+ S+CG P GYRL A
Sbjct: 33 VSKGPCRPGGGRGLRALGCLGSRSLCN---VGFGRPRVASRCGGTLPGFGYRLGATCGPS 89
Query: 57 AGLTVYT 63
A +T T
Sbjct: 90 ACITPVT 96
>gi|157653329 procollagen C-endopeptidase enhancer [Homo sapiens]
Length = 449
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 13 GQFCAGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAG 58
G+FC RP A + T R+ + G G RG+ L + RA +G
Sbjct: 109 GRFCGTFRPAPLVAPGNQVTLRMTTDEGTGG-RGFLLWYSGRATSG 153
>gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo
sapiens]
Length = 559
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 36 ISQCGAGAPRGYRLKAAWRAPAG 58
+ +CGAG PRG ++ PAG
Sbjct: 320 MQECGAGTPRGKKMADPEMLPAG 342
>gi|13376247 zinc finger protein 672 [Homo sapiens]
Length = 452
Score = 26.2 bits (56), Expect = 6.0
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 15 FCAGVRPLAHF-AEAGRGTKRLISQCGAGAPRGYRLKAAWRAPAGLTVYTEIELRVEVRP 73
FC L H A G G R + +CG R L+A R AG T+Y E R
Sbjct: 23 FCYSSVLLRHERAHGGDGRFRCL-ECGERCARAADLRAHRRTHAGQTLYICSECGQSFRH 81
Query: 74 GRRFPRSLA--QQQCTGSLGQALSARILHEPTL 104
R L +Q+C + R H P L
Sbjct: 82 SGRLDLHLGAHRQRCRTCPCRTCGRRFPHLPAL 114
>gi|227908867 protein arginine methyltransferase 6 [Homo sapiens]
Length = 375
Score = 25.8 bits (55), Expect = 7.8
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 27 EAGRGTKRLISQCG-AGAPRGYRLKAA--WRAPAGLTVYTEIELRVEVRPGRRFPRSLAQ 83
+ G GT L C AGA R Y ++A+ W+ + + +E RV V PG L
Sbjct: 88 DVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVEL-P 146
Query: 84 QQCTGSLGQALSARILHEPTL 104
+Q + + + +LHE L
Sbjct: 147 EQVDAIVSEWMGYGLLHESML 167
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 17 AGVRPLAHFAEAGRGTKRLISQCGAGAPRGYRLKAAWR--APAGLT 60
A R AH A GRG +L+ Q A +G + + R APAGLT
Sbjct: 83 APARTRAH-AHKGRGAGKLVIQARTRAQKGGKGEETRRGPAPAGLT 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,447,980
Number of Sequences: 37866
Number of extensions: 196576
Number of successful extensions: 395
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 14
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.