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Search of human proteins with 239509082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509082 PREDICTED: hypothetical protein [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171603 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|169171001 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|239509082 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|169171612 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|169172017 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|169171011 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|239509113 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|239753266 PREDICTED: hypothetical protein [Homo sapiens] 28 2.9
gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo ... 28 2.9
gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo ... 28 2.9
gi|41393593 aarF domain containing kinase 5 [Homo sapiens] 27 4.9
gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo ... 27 6.4
gi|239757956 PREDICTED: similar to CYorf16 protein [Homo sapiens] 26 8.4
gi|239752467 PREDICTED: hypothetical protein [Homo sapiens] 26 8.4
gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo ... 26 8.4
gi|187761337 transmembrane protease, serine 11B [Homo sapiens] 26 8.4
gi|122939157 gemin 4 [Homo sapiens] 26 8.4
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 26 8.4
>gi|169171603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171001 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239509082 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169172017 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|169171011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239509113 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 130/134 (97%), Positives = 132/134 (98%)
Query: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMVSTTMRSWWEIRGWEEQRLGRAEA 60
MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCM STT+RSWWEIRGWEEQRLGRAEA
Sbjct: 1 MSLLIQPAVFSTLVWVSGARPVCTASAGSLPFAFCMGSTTIRSWWEIRGWEEQRLGRAEA 60
Query: 61 GEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRVMHLPYPFIFIISPPL 120
GEALHNSSQA LSLWLSVGLGNCSFHPYIQAE+WKRLPNGISSRVMHLPYPFIFIISPPL
Sbjct: 61 GEALHNSSQAALSLWLSVGLGNCSFHPYIQAELWKRLPNGISSRVMHLPYPFIFIISPPL 120
Query: 121 KKLSIFARTLTNRN 134
KKLSIFARTLTNRN
Sbjct: 121 KKLSIFARTLTNRN 134
>gi|239753266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 27.7 bits (60), Expect = 2.9
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAVLS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A L+ W G
Sbjct: 75 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 134
Query: 82 NC-SFHPYIQAEVWKRLP 98
C F P +W +LP
Sbjct: 135 QCPGFRPPSPGSLWTQLP 152
>gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
Length = 183
Score = 27.7 bits (60), Expect = 2.9
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAVLS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A L+ W G
Sbjct: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
Query: 82 NC-SFHPYIQAEVWKRLP 98
C F P +W +LP
Sbjct: 124 QCPGFRPPSPGSLWTQLP 141
>gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo
sapiens]
Length = 183
Score = 27.7 bits (60), Expect = 2.9
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 42 RSWWEIR--------GWEEQRLGRAEAGEAL--------HNSSQAVLS----LWLSVGLG 81
R WW R WE ++GRA G+AL +S A L+ W G
Sbjct: 64 RRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDT 123
Query: 82 NC-SFHPYIQAEVWKRLP 98
C F P +W +LP
Sbjct: 124 QCPGFRPPSPGSLWTQLP 141
>gi|41393593 aarF domain containing kinase 5 [Homo sapiens]
Length = 580
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 44 WW----EIRGWEEQRLGRAEAGEALHNSSQAVL--------SLWLSVGLGNCSFHPYIQA 91
WW +RG EE G E A H + L L++ +G G CSF+ +
Sbjct: 102 WWCTNVVLRGVEENSPGYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPP 161
Query: 92 EVWKRL 97
E + L
Sbjct: 162 EYTRTL 167
>gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo
sapiens]
Length = 854
Score = 26.6 bits (57), Expect = 6.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 96 RLPNGISSRVMHLPYPFIFIISPPLKK 122
+LP + MH P+ F+ + SPP K+
Sbjct: 654 KLPVNRQLKFMHTPHQFLLLSSPPAKE 680
>gi|239757956 PREDICTED: similar to CYorf16 protein [Homo sapiens]
Length = 223
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 73 SLWLSVGLGNCSFHPYIQAEV-WKRLPNGISS 103
SL L +G+G FHPY + V W P G S+
Sbjct: 187 SLSLEIGMGLLMFHPYCEDTVRWNPDPLGESA 218
>gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 73 SLWLSVGLGNCSFHPYIQAEV-WKRLPNGISS 103
SL L +G+G FHPY + V W P G S+
Sbjct: 321 SLSLEIGMGLLMFHPYCEDTVRWNPDPLGESA 352
>gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo
sapiens]
Length = 357
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 73 SLWLSVGLGNCSFHPYIQAEV-WKRLPNGISS 103
SL L +G+G FHPY + V W P G S+
Sbjct: 321 SLSLEIGMGLLMFHPYCEDTVRWNPDPLGESA 352
>gi|187761337 transmembrane protease, serine 11B [Homo sapiens]
Length = 416
Score = 26.2 bits (56), Expect = 8.4
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 60 AGEALHNSSQAVLSLWLSVGLGNCSFHPYIQAEVWKRLPNGISSRV-MHLPYPFIFIISP 118
A +A N S+ + + L+ + + Y+++EV K LPN S V + L + F P
Sbjct: 66 ASQASTNLSKDIETKMLNAFQNSSIYKEYVKSEVIKLLPNANGSNVQLQLKFKF-----P 120
Query: 119 PLKKLSI 125
P + +S+
Sbjct: 121 PAEGVSM 127
>gi|122939157 gemin 4 [Homo sapiens]
Length = 1058
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 87 PYIQAEVWKRLPNG----ISSRVMHLPYPFIFIISPPLKKLSIFARTL 130
P+ + W+RL + +++H+PY +I PL L FA+ L
Sbjct: 862 PWCSPQEWQRLHQLTRRLLEKQLLHVPYSLEYIQFVPLLNLKPFAQEL 909
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 82 NCSFHPYIQAEVWKRLPNGISSRVMHLPYP-FIF 114
+C F P++ E K++P+ SR++ L P FIF
Sbjct: 2076 DCFFKPFLPREGLKKIPSEKLSRIVELIEPWFIF 2109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.134 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,206,108
Number of Sequences: 37866
Number of extensions: 198266
Number of successful extensions: 496
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 18
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.