Guide to the Human Genome
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Name: LOC100132628 Sequence: fasta or formatted (134aa) NCBI GI: 239509082
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {134aa} PREDICTED: hypothetical protein
alt mRNA {134aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         11           1
 C cysteine            2.2          3           1
 D aspartate           0.0          0           0
 E glutamate           4.5          6           2
 F phenylalanine       5.2          7           1
 G glycine             6.0          8           1
 H histidine           2.2          3           1
 I isoleucine          6.0          8           2
 K lysine              2.2          3           2
 L leucine            11.2         15           2
 M methionine          3.0          4           1
 N asparagine          3.7          5           1
 P proline             6.7          9           2
 Q glutamine           3.0          4           1
 R arginine            6.7          9           1
 S serine             11.9         16           2
 T threonine           4.5          6           2
 V valine              6.7          9           1
 W tryptophan          4.5          6           2
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132628          1.000   PREDICTED: hypothetical protein 
LOC100132628          1.000   PREDICTED: hypothetical protein 
LOC100130228          0.972   PREDICTED: hypothetical protein 
LOC100130228          0.972   PREDICTED: hypothetical protein 
LOC100130228          0.972   PREDICTED: hypothetical protein 
LOC100130228          0.972   PREDICTED: hypothetical protein 
LOC100292423          0.012   PREDICTED: hypothetical protein 
LOC100291337          0.012   PREDICTED: hypothetical protein XP_002348329 
LOC100287998          0.012   PREDICTED: hypothetical protein XP_002342281 
ADCK5                 0.008   aarF domain containing kinase 5 
PARP8                 0.008   poly (ADP-ribose) polymerase family, member 8 
LOC100292670          0.004   PREDICTED: similar to CYorf16 protein 
LOC100289265          0.004   PREDICTED: hypothetical protein 
LOC100289265          0.004   PREDICTED: hypothetical protein XP_002344242 
TMPRSS11B             0.004   transmembrane protease, serine 11B 
GEMIN4                0.004   gemin 4 
DNAH1                 0.004   dynein, axonemal, heavy chain 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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