Search of human proteins with 238624124

Search of human proteins with 238624124

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|238624124 trafficking protein particle complex 9 isoform b
[Homo sapiens]
         (1148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|238624124 trafficking protein particle complex 9 isoform b [H...  2312   0.0  
gi|238624122 trafficking protein particle complex 9 isoform a [H...  2312   0.0  
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap...    35   0.53 
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa...    34   0.91 
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa...    34   0.91 
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik...    34   0.91 
gi|153792780 additional sex combs like 2 [Homo sapiens]                33   2.0  
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ...    31   5.9  
gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ...    31   5.9  
gi|35493801 ring finger protein 19 [Homo sapiens]                      31   5.9  
gi|35493782 ring finger protein 19 [Homo sapiens]                      31   5.9  
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]    31   7.7  
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap...    31   7.7  

>gi|238624124 trafficking protein particle complex 9 isoform b [Homo
            sapiens]
          Length = 1148

 Score = 2312 bits (5992), Expect = 0.0
 Identities = 1148/1148 (100%), Positives = 1148/1148 (100%)

Query: 1    MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 60
            MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
Sbjct: 1    MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 60

Query: 61   YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 120
            YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
Sbjct: 61   YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 120

Query: 121  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 180
            QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
Sbjct: 121  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 180

Query: 181  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 240
            PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
Sbjct: 181  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 240

Query: 241  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 300
            WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
Sbjct: 241  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 300

Query: 301  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
            NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
Sbjct: 301  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360

Query: 361  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 420
            SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
Sbjct: 361  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 420

Query: 421  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 480
            AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
Sbjct: 421  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 480

Query: 481  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 540
            VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
Sbjct: 481  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 540

Query: 541  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 600
            RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
Sbjct: 541  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 600

Query: 601  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 660
            VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
Sbjct: 601  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 660

Query: 661  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 720
            GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
Sbjct: 661  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 720

Query: 721  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 780
            NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
Sbjct: 721  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 780

Query: 781  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 840
            QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
Sbjct: 781  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 840

Query: 841  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 900
            ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
Sbjct: 841  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 900

Query: 901  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 960
            TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
Sbjct: 901  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 960

Query: 961  ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1020
            ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
Sbjct: 961  ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1020

Query: 1021 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1080
            LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
Sbjct: 1021 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1080

Query: 1081 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1140
            VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
Sbjct: 1081 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1140

Query: 1141 VCALEAQA 1148
            VCALEAQA
Sbjct: 1141 VCALEAQA 1148


>gi|238624122 trafficking protein particle complex 9 isoform a [Homo
            sapiens]
          Length = 1246

 Score = 2312 bits (5992), Expect = 0.0
 Identities = 1148/1148 (100%), Positives = 1148/1148 (100%)

Query: 1    MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 60
            MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
Sbjct: 99   MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 158

Query: 61   YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 120
            YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
Sbjct: 159  YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 218

Query: 121  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 180
            QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
Sbjct: 219  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 278

Query: 181  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 240
            PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
Sbjct: 279  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 338

Query: 241  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 300
            WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
Sbjct: 339  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 398

Query: 301  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
            NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
Sbjct: 399  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458

Query: 361  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 420
            SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
Sbjct: 459  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 518

Query: 421  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 480
            AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
Sbjct: 519  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 578

Query: 481  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 540
            VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
Sbjct: 579  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 638

Query: 541  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 600
            RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
Sbjct: 639  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 698

Query: 601  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 660
            VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
Sbjct: 699  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 758

Query: 661  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 720
            GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
Sbjct: 759  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 818

Query: 721  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 780
            NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
Sbjct: 819  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 878

Query: 781  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 840
            QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
Sbjct: 879  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 938

Query: 841  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 900
            ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
Sbjct: 939  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 998

Query: 901  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 960
            TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
Sbjct: 999  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 1058

Query: 961  ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1020
            ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
Sbjct: 1059 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1118

Query: 1021 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1080
            LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
Sbjct: 1119 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1178

Query: 1081 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1140
            VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
Sbjct: 1179 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1238

Query: 1141 VCALEAQA 1148
            VCALEAQA
Sbjct: 1239 VCALEAQA 1246


>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
           sapiens]
          Length = 570

 Score = 34.7 bits (78), Expect = 0.53
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 20/97 (20%)

Query: 301 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA ++ +R+L  QK 
Sbjct: 80  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVQTIRILTCQKT 128

Query: 361 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 396
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 129 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 157


>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 750

 Score = 33.9 bits (76), Expect = 0.91
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 301 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 92  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140

Query: 361 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 396
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169


>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 668

 Score = 33.9 bits (76), Expect = 0.91
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 301 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 92  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140

Query: 361 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 396
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169


>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
           protein 6 [Homo sapiens]
          Length = 724

 Score = 33.9 bits (76), Expect = 0.91
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 301 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 153 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 201

Query: 361 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 396
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 202 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 230


>gi|153792780 additional sex combs like 2 [Homo sapiens]
          Length = 1435

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 652 QTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV--------EVIPALPRLQI-STS 702
           +T  ++ V    + +  + +   L+ LP  + S +T           +PA   L+   TS
Sbjct: 873 KTDASVPVAVTPSPLTSLLTTATLEKLPVPQVSATTAPAGSAPPSSTLPAASSLKTPGTS 932

Query: 703 LPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEK 761
           L  +  +L+P+S    +  +  QL  G+     + +E I  +PL K+E+ +  LT KE+
Sbjct: 933 LNMNGPTLRPTSSIPANNPLVTQLLQGKD----VPMEQILPKPLTKVEMKTVPLTAKEE 987


>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
           sapiens]
          Length = 1583

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 206 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 236
           R H+  LC +AG+LQ +L HY    ++ R+V
Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640


>gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo
           sapiens]
          Length = 1640

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 206 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 236
           R H+  LC +AG+LQ +L HY    ++ R+V
Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640


>gi|35493801 ring finger protein 19 [Homo sapiens]
          Length = 838

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 654 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 706
           TG+++ +G H    G   D L +    +  +G+++        ++    RL++   + + 
Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571

Query: 707 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 754
            +SL   SG      +S N S +   G      I L+  G     ++++ SK
Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623


>gi|35493782 ring finger protein 19 [Homo sapiens]
          Length = 838

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 654 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 706
           TG+++ +G H    G   D L +    +  +G+++        ++    RL++   + + 
Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571

Query: 707 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 754
            +SL   SG      +S N S +   G      I L+  G     ++++ SK
Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623


>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
          Length = 1073

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 648 VGVPQTTGTITVNGYHTTVFGVF----SDCLLDNL----------------PGIKTSGST 687
           +G+   TGT TVN  + T  G F    +  +L N+                PG+ TSG  
Sbjct: 302 IGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGV-TSGVN 360

Query: 688 VEVIPALPRLQISTSLPRSA--HSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEP 745
           V ++  +    IS+S   S+  ++    +G  +S+       N  S+  ++KL++   EP
Sbjct: 361 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVN-TSRFRVVKLDS-SSEP 418

Query: 746 LEKLEVTSKVLTTKEKLY---GDFLSWKLEETLAQFPLQ 781
            +K   T      KE         L  K+ ET+ Q P++
Sbjct: 419 FKKGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIE 457


>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
           sapiens]
          Length = 735

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 819 PLSSPFRQVVRPRVEGKPVNPPESNKAGDYS 849
           PL+ P   V RPR  G P +PP +  AGD+S
Sbjct: 627 PLADP-EVVTRPRGRGGPESPPSNRYAGDWS 656


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,566,552
Number of Sequences: 37866
Number of extensions: 2137349
Number of successful extensions: 4788
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4781
Number of HSP's gapped (non-prelim): 16
length of query: 1148
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1035
effective length of database: 13,968,660
effective search space: 14457563100
effective search space used: 14457563100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.