Guide to the Human Genome
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Name: EMCN Sequence: fasta or formatted (248aa) NCBI GI: 229576885
Description:

endomucin isoform 2

Referenced in:

Mucins

Other entries for this name:
alt prot [261aa] endomucin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         11           2
 C cysteine            0.8          2           1
 D aspartate           2.8          7           1
 E glutamate           4.4         11           1
 F phenylalanine       1.2          3           1
 G glycine             5.2         13           2
 H histidine           0.8          2           1
 I isoleucine          6.0         15           2
 K lysine              6.9         17           1
 L leucine             9.7         24           2
 M methionine          1.6          4           1
 N asparagine          5.6         14           2
 P proline             6.0         15           1
 Q glutamine           3.6          9           1
 R arginine            1.2          3           1
 S serine             14.1         35           2
 T threonine          15.3         38           3
 V valine              8.9         22           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endomucin isoform 2 
EMCN                  0.976   endomucin isoform 1 
LOC729792             0.053   PREDICTED: hypothetical protein 
LOC729792             0.053   PREDICTED: hypothetical protein 
LOC729792             0.053   PREDICTED: hypothetical protein 
LOC100294501          0.053   PREDICTED: hypothetical protein 
LOC100294249          0.053   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.053   PREDICTED: hypothetical protein 
LOC100294204          0.053   PREDICTED: hypothetical protein 
LOC100294136          0.053   PREDICTED: hypothetical protein 
LOC100294091          0.053   PREDICTED: hypothetical protein 
LOC730401             0.053   PREDICTED: hypothetical protein 
LOC730474             0.053   PREDICTED: hypothetical protein 
LOC730474             0.051   PREDICTED: hypothetical protein, partial 
LOC100133790          0.051   PREDICTED: intestinal mucin-like, partial 
MUC17                 0.047   mucin 17 
MUC3B                 0.044   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100131251          0.042   PREDICTED: hypothetical protein 
LOC100131251          0.042   PREDICTED: hypothetical protein 
MUC4                  0.042   mucin 4 isoform a 
MUC2                  0.038   mucin 2 precursor 
LOC100131514          0.038   PREDICTED: similar to hCG1747327, partial 
LOC100131514          0.038   PREDICTED: similar to intestinal mucin MUC3B 
MUC5AC                0.038   mucin 5AC 
MUC3A                 0.038   PREDICTED: mucin 3A, intestinal 
MUC5B                 0.038   mucin 5, subtype B, tracheobronchial 
HAVCR1                0.035   hepatitis A virus cellular receptor 1 
HAVCR1                0.035   hepatitis A virus cellular receptor 1 
LOC100294420          0.035   PREDICTED: similar to mucin 2 
ATXN7L1               0.033   ataxin 7-like 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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