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Search of human proteins with 22748837
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748837 PQ loop repeat containing 3 [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748837 PQ loop repeat containing 3 [Homo sapiens] 402 e-112
gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens] 56 2e-08
gi|169215927 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|239752137 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|169215514 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 5.3
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 28 6.9
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 28 6.9
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 28 6.9
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 28 6.9
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 28 6.9
gi|41584200 G protein-coupled receptor 56 isoform a precursor [H... 27 9.0
gi|224809323 G protein-coupled receptor 56 isoform b precursor [... 27 9.0
gi|224809320 G protein-coupled receptor 56 isoform c precursor [... 27 9.0
gi|224809318 G protein-coupled receptor 56 isoform b precursor [... 27 9.0
gi|224809316 G protein-coupled receptor 56 isoform a precursor [... 27 9.0
gi|224809314 G protein-coupled receptor 56 isoform b precursor [... 27 9.0
gi|41584198 G protein-coupled receptor 56 isoform b precursor [H... 27 9.0
gi|41584202 G protein-coupled receptor 56 isoform b precursor [H... 27 9.0
>gi|22748837 PQ loop repeat containing 3 [Homo sapiens]
Length = 202
Score = 402 bits (1033), Expect = e-112
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYG 60
MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYG
Sbjct: 1 MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYG 60
Query: 61 YPPLTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNL 120
YPPLTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNL
Sbjct: 61 YPPLTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNL 120
Query: 121 CTFISAASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIM 180
CTFISAASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIM
Sbjct: 121 CTFISAASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIM 180
Query: 181 LALNIWVTVTVLRYRKTAIKAE 202
LALNIWVTVTVLRYRKTAIKAE
Sbjct: 181 LALNIWVTVTVLRYRKTAIKAE 202
>gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens]
Length = 247
Score = 55.8 bits (133), Expect = 2e-08
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 14 LGVCAA---LKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP 70
LG+ A +KLPQ+ +L A+SA GLSL S++LEL + Y +P ++ E
Sbjct: 48 LGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEAL 107
Query: 71 ILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLA-MNLCTFISAAS- 128
L+ Q + + + H+ G + ++A + L L + L + + T + A++
Sbjct: 108 FLMLQTITICFLVMHYRGQTVKGVAFLAC-----YGLVLLVLLSPLTPLTVVTLLQASNV 162
Query: 129 ------KFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLA 182
+ Q + +G +SA+T L RI T++ T D + FV+
Sbjct: 163 PAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSL 222
Query: 183 LNIWVTVTVLRY 194
N + +L Y
Sbjct: 223 CNGLIAAQLLFY 234
>gi|169215927 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 FAQLQCLWKTR-DSGTVSALTWSLSSYTCATRIITTL 165
F L LW D G VSA WSL+S T R+ TL
Sbjct: 307 FLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTL 343
>gi|239752137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 FAQLQCLWKTR-DSGTVSALTWSLSSYTCATRIITTL 165
F L LW D G VSA WSL+S T R+ TL
Sbjct: 307 FLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTL 343
>gi|169215514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 FAQLQCLWKTR-DSGTVSALTWSLSSYTCATRIITTL 165
F L LW D G VSA WSL+S T R+ TL
Sbjct: 307 FLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTL 343
>gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 356
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 FAQLQCLWKTR-DSGTVSALTWSLSSYTCATRIITTL 165
F L LW D G VSA WSL+S T R+ TL
Sbjct: 306 FLGLSLLWTVLLDPGAVSAWLWSLTSETTLRRLRYTL 342
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 LCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYL 67
LC + C+ ++P S V + + S+P +L+ C + P+ Y
Sbjct: 129 LCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQ----------ACSVQHLPVPYA 178
Query: 68 EYPILIAQDVILL 80
+P LI+ D L+
Sbjct: 179 AFPPLISSDPFLI 191
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 LCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYL 67
LC + C+ ++P S V + + S+P +L+ C + P+ Y
Sbjct: 129 LCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQ----------ACSVQHLPVPYA 178
Query: 68 EYPILIAQDVILL 80
+P LI+ D L+
Sbjct: 179 AFPPLISSDPFLI 191
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 LCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYL 67
LC + C+ ++P S V + + S+P +L+ C + P+ Y
Sbjct: 162 LCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQ----------ACSVQHLPVPYA 211
Query: 68 EYPILIAQDVILL 80
+P LI+ D L+
Sbjct: 212 AFPPLISSDPFLI 224
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 LCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYL 67
LC + C+ ++P S V + + S+P +L+ C + P+ Y
Sbjct: 129 LCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQ----------ACSVQHLPVPYA 178
Query: 68 EYPILIAQDVILL 80
+P LI+ D L+
Sbjct: 179 AFPPLISSDPFLI 191
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 LCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYL 67
LC + C+ ++P S V + + S+P +L+ C + P+ Y
Sbjct: 212 LCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQ----------ACSVQHLPVPYA 261
Query: 68 EYPILIAQDVILL 80
+P LI+ D L+
Sbjct: 262 AFPPLISSDPFLI 274
>gi|41584200 G protein-coupled receptor 56 isoform a precursor [Homo
sapiens]
Length = 693
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|224809323 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|224809320 G protein-coupled receptor 56 isoform c precursor
[Homo sapiens]
Length = 692
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 108 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 149
>gi|224809318 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|224809316 G protein-coupled receptor 56 isoform a precursor
[Homo sapiens]
Length = 693
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|224809314 G protein-coupled receptor 56 isoform b precursor
[Homo sapiens]
Length = 687
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|41584198 G protein-coupled receptor 56 isoform b precursor [Homo
sapiens]
Length = 687
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
>gi|41584202 G protein-coupled receptor 56 isoform b precursor [Homo
sapiens]
Length = 687
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 64 LTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWF 105
L Y + L++ LLC H ++ Q P +A V+SW+
Sbjct: 103 LLYGKRDFLLSDKASSLLCFQHQEESLAQGPPLLATSVTSWW 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,687,870
Number of Sequences: 37866
Number of extensions: 240403
Number of successful extensions: 680
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 19
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.