Search of human proteins with 226371646

Search of human proteins with 226371646

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226371646 B9 protein domain 2 [Homo sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226371646 B9 protein domain 2 [Homo sapiens]                       379   e-106
gi|7661536 B9 protein [Homo sapiens]                                   77   6e-15
gi|89242137 Meckel syndrome, type 1 [Homo sapiens]                     63   1e-10
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]           32   0.28 
gi|222418587 hypothetical protein LOC57495 [Homo sapiens]              28   4.1  
gi|218083269 chitinase domain containing 1 isoform c [Homo sapiens]    28   5.3  
gi|218083233 chitinase domain containing 1 isoform b [Homo sapiens]    28   5.3  
gi|218083215 chitinase domain containing 1 isoform a [Homo sapiens]    28   5.3  
gi|218083182 chitinase domain containing 1 isoform a [Homo sapiens]    28   5.3  
gi|218083142 chitinase domain containing 1 isoform a [Homo sapiens]    28   5.3  
gi|123701326 zinc finger protein 831 [Homo sapiens]                    27   6.9  

>gi|226371646 B9 protein domain 2 [Homo sapiens]
          Length = 175

 Score =  379 bits (974), Expect = e-106
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MAEVHVIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHP 60
           MAEVHVIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHP
Sbjct: 1   MAEVHVIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHP 60

Query: 61  IDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR 120
           IDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR
Sbjct: 61  IDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR 120

Query: 121 EQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC 175
           EQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC
Sbjct: 121 EQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC 175


>gi|7661536 B9 protein [Homo sapiens]
          Length = 204

 Score = 77.4 bits (189), Expect = 6e-15
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 3/172 (1%)

Query: 6   VIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--IGDMAYWSHPIDL 63
           V GQ+  A       L+CK+    G  W   +G+ EG +Q+ +    +     W+ PID+
Sbjct: 13  VNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQDVRQALVWNFPIDV 72

Query: 64  HFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR-EQ 122
            F +    GWP++   V+  D FG   + GYG  HVP SPG H+   P + P  + + ++
Sbjct: 73  TFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTIPMFVPESTSKLQK 132

Query: 123 LARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVE 174
               F+G  P+      +  G  R      + G V L   ++ ++  + G +
Sbjct: 133 FTSWFMGRRPEYTDPKVVAQGEGREVTRVRSQGFVTLLFNVVTKDMRKLGYD 184


>gi|89242137 Meckel syndrome, type 1 [Homo sapiens]
          Length = 559

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 24/181 (13%)

Query: 6   VIGQIIGASGFSESSLFCKWGIH------TGAAWKLLSGVREGQTQVDTPQIGDMAYWSH 59
           V G+++ A G+   +L+  + +       +  A++ LSGV +  T   +  +  +A++S+
Sbjct: 315 VNGEVVSAQGYEYDNLYVHFFVELPTAHWSSPAFQQLSGVTQTCT-TKSLAMDKVAHFSY 373

Query: 60  PIDLHF-------ATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPT 112
           P            ++  L  WP L+ +V S D + R ++ GYG   +P++PG+H L   T
Sbjct: 374 PFTFEAFFLHEDESSDALPEWPVLYCEVLSLDFWQRYRVEGYGAVVLPATPGSHTLTVST 433

Query: 113 WRP--LGSWREQLARAFVGGGPQL-------LHGDTIYSGADRYRLHTAAGGTVHLEIGL 163
           WRP  LG+  E L R F+GG  +L       + G        R+ L T   GTV   +  
Sbjct: 434 WRPVELGTVAE-LRRFFIGGSLELEDLSYVRIPGSFKGERLSRFGLRTETTGTVTFRLHC 492

Query: 164 L 164
           L
Sbjct: 493 L 493


>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
          Length = 984

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 9/135 (6%)

Query: 12  GASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHPIDLHFATKGLQ 71
           G +  S SS+       T A+   L G  +      TP +G +  +  P  L   T    
Sbjct: 574 GINSVSSSSVSTTTSTATAASQPFLFGAPQASAASFTPAMGSIFQFGKPPALPTTTTVTT 633

Query: 72  GWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGT--------HQLACPTWR-PLGSWREQ 122
               LH  V +  S      +G+G     S+P T           + PT+  P GS  + 
Sbjct: 634 FSQSLHTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTPTFNIPFGSSAKS 693

Query: 123 LARAFVGGGPQLLHG 137
              ++ G  PQ   G
Sbjct: 694 PLPSYPGANPQPAFG 708


>gi|222418587 hypothetical protein LOC57495 [Homo sapiens]
          Length = 1742

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 70   LQGWPRLHFQVWSQDSFGRCQLAG-YGFC 97
            L GWP   F  W + +  +C L G Y FC
Sbjct: 1087 LYGWPLYQFHCWYEVTCVQCSLDGLYAFC 1115


>gi|218083269 chitinase domain containing 1 isoform c [Homo sapiens]
          Length = 362

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 5   HVIGQIIG------ASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAY-W 57
           H  G ++G      + G+  + +F          W  L   R G+   +   + D+   W
Sbjct: 76  HFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLK--RRGREMFEVTGLHDVDQGW 133

Query: 58  SHPIDLHFATKGLQGWPRLHFQVWSQDSF 86
              +  H   KGL   PRL F+ W+ D F
Sbjct: 134 MRAVRKH--AKGLHIVPRLLFEDWTYDDF 160


>gi|218083233 chitinase domain containing 1 isoform b [Homo sapiens]
          Length = 418

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 5   HVIGQIIG------ASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAY-W 57
           H  G ++G      + G+  + +F          W  L   R G+   +   + D+   W
Sbjct: 101 HFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLK--RRGREMFEVTGLHDVDQGW 158

Query: 58  SHPIDLHFATKGLQGWPRLHFQVWSQDSF 86
              +  H   KGL   PRL F+ W+ D F
Sbjct: 159 MRAVRKH--AKGLHIVPRLLFEDWTYDDF 185


>gi|218083215 chitinase domain containing 1 isoform a [Homo sapiens]
          Length = 393

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 5   HVIGQIIG------ASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAY-W 57
           H  G ++G      + G+  + +F          W  L   R G+   +   + D+   W
Sbjct: 76  HFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLK--RRGREMFEVTGLHDVDQGW 133

Query: 58  SHPIDLHFATKGLQGWPRLHFQVWSQDSF 86
              +  H   KGL   PRL F+ W+ D F
Sbjct: 134 MRAVRKH--AKGLHIVPRLLFEDWTYDDF 160


>gi|218083182 chitinase domain containing 1 isoform a [Homo sapiens]
          Length = 393

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 5   HVIGQIIG------ASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAY-W 57
           H  G ++G      + G+  + +F          W  L   R G+   +   + D+   W
Sbjct: 76  HFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLK--RRGREMFEVTGLHDVDQGW 133

Query: 58  SHPIDLHFATKGLQGWPRLHFQVWSQDSF 86
              +  H   KGL   PRL F+ W+ D F
Sbjct: 134 MRAVRKH--AKGLHIVPRLLFEDWTYDDF 160


>gi|218083142 chitinase domain containing 1 isoform a [Homo sapiens]
          Length = 393

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 5   HVIGQIIG------ASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAY-W 57
           H  G ++G      + G+  + +F          W  L   R G+   +   + D+   W
Sbjct: 76  HFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLK--RRGREMFEVTGLHDVDQGW 133

Query: 58  SHPIDLHFATKGLQGWPRLHFQVWSQDSF 86
              +  H   KGL   PRL F+ W+ D F
Sbjct: 134 MRAVRKH--AKGLHIVPRLLFEDWTYDDF 160


>gi|123701326 zinc finger protein 831 [Homo sapiens]
          Length = 1677

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 87   GRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWREQLAR 125
            G  Q++ + +  VP     HQ++ P W+    WR +++R
Sbjct: 1240 GPAQMSKFSYPTVPGVMPQHQVSEPEWKKGLPWRAKMSR 1278


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,810,919
Number of Sequences: 37866
Number of extensions: 370819
Number of successful extensions: 634
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 11
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.