Search of human proteins with 223029480

Search of human proteins with 223029480

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223029480 hypothetical protein LOC255352 [Homo sapiens]
         (405 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223029480 hypothetical protein LOC255352 [Homo sapiens]            816   0.0  
gi|223278415 taste receptor, type 2, member 38 [Homo sapiens]          33   0.35 
gi|155030226 phosphatidylinositol 4-kinase type 3 alpha isoform ...    32   1.3  
gi|225637489 hypothetical protein LOC54777 [Homo sapiens]              31   1.8  
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]           30   3.9  
gi|7662294 EPM2A interacting protein 1 [Homo sapiens]                  30   3.9  
gi|90421313 cystic fibrosis transmembrane conductance regulator ...    30   5.1  
gi|11415052 retinoid X receptor, beta [Homo sapiens]                   29   6.7  
gi|156616308 SET and MYND domain containing 4 [Homo sapiens]           29   8.7  

>gi|223029480 hypothetical protein LOC255352 [Homo sapiens]
          Length = 405

 Score =  816 bits (2108), Expect = 0.0
 Identities = 405/405 (100%), Positives = 405/405 (100%)

Query: 1   MDLVITQELARAESQQDAASLKKAYELIKSANLGKSEFDPSESFSPDLFVLCAEQALKMR 60
           MDLVITQELARAESQQDAASLKKAYELIKSANLGKSEFDPSESFSPDLFVLCAEQALKMR
Sbjct: 1   MDLVITQELARAESQQDAASLKKAYELIKSANLGKSEFDPSESFSPDLFVLCAEQALKMR 60

Query: 61  QPEVSEDCIQMYFKVKAPITQFLGRAHLCRAQMCAPKSAENLEEFENCVTEYMKAINFAK 120
           QPEVSEDCIQMYFKVKAPITQFLGRAHLCRAQMCAPKSAENLEEFENCVTEYMKAINFAK
Sbjct: 61  QPEVSEDCIQMYFKVKAPITQFLGRAHLCRAQMCAPKSAENLEEFENCVTEYMKAINFAK 120

Query: 121 GEPRYYFLVYNASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLE 180
           GEPRYYFLVYNASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLE
Sbjct: 121 GEPRYYFLVYNASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLE 180

Query: 181 LLECYLQAGRKEEAARFCSTAAPFIKSHVPQKYRQIFSVMVRHELMDELQLKEEKKNSIS 240
           LLECYLQAGRKEEAARFCSTAAPFIKSHVPQKYRQIFSVMVRHELMDELQLKEEKKNSIS
Sbjct: 181 LLECYLQAGRKEEAARFCSTAAPFIKSHVPQKYRQIFSVMVRHELMDELQLKEEKKNSIS 240

Query: 241 LSVTFYINMLKAKAEQNDLPGDINVILRKAYRHLGHYNHQRFPSISEEKMLLLFELARFS 300
           LSVTFYINMLKAKAEQNDLPGDINVILRKAYRHLGHYNHQRFPSISEEKMLLLFELARFS
Sbjct: 241 LSVTFYINMLKAKAEQNDLPGDINVILRKAYRHLGHYNHQRFPSISEEKMLLLFELARFS 300

Query: 301 LTLKCMEISSACLSDLKKMESKVSGFMTLLPGDEALLTVQLDKRQRKEEQFTRPRPPGLR 360
           LTLKCMEISSACLSDLKKMESKVSGFMTLLPGDEALLTVQLDKRQRKEEQFTRPRPPGLR
Sbjct: 301 LTLKCMEISSACLSDLKKMESKVSGFMTLLPGDEALLTVQLDKRQRKEEQFTRPRPPGLR 360

Query: 361 SVVGTLPSFLPVFCTVAVRWCLQFYTCPFLFTFLVATGPQHHSCF 405
           SVVGTLPSFLPVFCTVAVRWCLQFYTCPFLFTFLVATGPQHHSCF
Sbjct: 361 SVVGTLPSFLPVFCTVAVRWCLQFYTCPFLFTFLVATGPQHHSCF 405


>gi|223278415 taste receptor, type 2, member 38 [Homo sapiens]
          Length = 333

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 336 LLTVQLDKRQRKEEQFTR-PRPPGLRSVVGTLPSFLPVFCTVAVRWCLQFYTCPFL 390
           +LTV L +  R  + +TR  R P L + +  L S +  FC   +  C  F + P L
Sbjct: 215 MLTVSLGRHMRTMKVYTRNSRDPSLEAHIKALKSLVSFFCFFVISSCAAFISVPLL 270


>gi|155030226 phosphatidylinositol 4-kinase type 3 alpha isoform 2
           [Homo sapiens]
          Length = 2044

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 132 ASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLELLECYLQAGRK 191
           AS + +   + +   GYRH  +  ++ + N+ +  ++E      EL++ LLE ++Q G +
Sbjct: 628 ASSVVYSATKDYKDHGYRHCSLAVINALANIAANIQDEHLV--DELLMNLLELFVQLGLE 685

Query: 192 -EEAARFCSTAAPFIKS 207
            + A+   S   P +K+
Sbjct: 686 GKRASERASEKGPALKA 702


>gi|225637489 hypothetical protein LOC54777 [Homo sapiens]
          Length = 2441

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 121 GEPRYYFLVYNASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLE 180
           G+PR   +++      W    P L+   RHHL   L+ + +VL + +      R ++ +E
Sbjct: 101 GDPR---VIHVVCATQWNTCLPLLQHNLRHHLRKPLAGVADVLEKLDSLMTLLRCQVHME 157

Query: 181 LLECYLQAGRKEEAARFCSTAA 202
           + +      R E A      AA
Sbjct: 158 MAQIEEDEDRLEPATEHLRKAA 179


>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
          Length = 1989

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 155  SLSQIINVLSQTEEEDKEWRAELMLELLECYLQAGRKEEAARFCSTAAPF 204
            SL   +NVL++  E +K+   E+    L  + + G K+E    C TA  +
Sbjct: 1382 SLDSALNVLARALENNKD-NPEIWCHYLRLFSKRGTKDEVQEMCETAVEY 1430


>gi|7662294 EPM2A interacting protein 1 [Homo sapiens]
          Length = 607

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 11/154 (7%)

Query: 154 PSLSQIINVLSQTEEEDKEWRAELMLELLECYLQA--GRKEEAARFC-------STAAPF 204
           P+L ++++ L Q  +ED++       +++ C LQ    R  +  RF        S    F
Sbjct: 435 PALREVVDELKQQNKEDEKIFDPDRYQMVICRLQKEFERHFKDLRFIKKDLELFSNPFNF 494

Query: 205 IKSHVPQKYR-QIFSVMVRHELMDELQLKEEKKNSISLSVTFYINMLKAKAEQNDLPGDI 263
              + P   R ++  +     L +E ++K+  +    LS   Y  ++K  A +     D 
Sbjct: 495 KPEYAPISVRVELTKLQANTNLWNEYRIKDLGQFYAGLSAESY-PIIKGVACKVASLFDS 553

Query: 264 NVILRKAYRHLGHYNHQRFPSISEEKMLLLFELA 297
           N I  KA+ +L    H     +++E +  LF +A
Sbjct: 554 NQICEKAFSYLTRNQHTLSQPLTDEHLQALFRVA 587


>gi|90421313 cystic fibrosis transmembrane conductance regulator
           [Homo sapiens]
          Length = 1480

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)

Query: 133 SVLYWQMVRPFLKPGYRHHL-------IPSLSQIINVLSQTEEEDKEWRAEL 177
           S L++   RP L+ GYR  L       IPS+    N+   +E+ ++EW  EL
Sbjct: 13  SKLFFSWTRPILRKGYRQRLELSDIYQIPSVDSADNL---SEKLEREWDREL 61


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 230 QLKEEKKNSISLSVTFYINMLKAKAEQNDLPGDINVILRKAYRHLGHYNHQRFPSISEEK 289
           ++++ + +   L     I +    A+    P ++ V+  K Y  L  Y  Q++P      
Sbjct: 427 KMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRF 486

Query: 290 MLLLFEL-ARFSLTLKCME 307
             LL  L A  S+ LKC+E
Sbjct: 487 AKLLLRLPALRSIGLKCLE 505


>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
          Length = 804

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 27/129 (20%)

Query: 164 SQTEEEDKEWRAELMLELLECYLQAGRKEEAARFCS------TAAPFIKSHVPQK-YRQI 216
           +QT    +  + ++ML   EC +  GR +EA++  S      TA P +   +PQ   R +
Sbjct: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191

Query: 217 FSVMVRHELMDEL---------------QLKEEKK--NSISLSVTFYINMLKAK---AEQ 256
             + ++ +  D L                L+EE +  ++ S S+   ++ LK +   A +
Sbjct: 192 HRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVDPLKGRCLVATK 251

Query: 257 NDLPGDINV 265
           + LPG++ V
Sbjct: 252 DILPGELLV 260


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,400,387
Number of Sequences: 37866
Number of extensions: 665637
Number of successful extensions: 1766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 9
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.