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Search of human proteins with 21624607
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21624607 coactosin-like 1 [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21624607 coactosin-like 1 [Homo sapiens] 285 7e-78
gi|171906575 drebrin-like isoform c [Homo sapiens] 47 5e-06
gi|62198235 drebrin-like isoform b [Homo sapiens] 47 5e-06
gi|21361670 drebrin-like isoform a [Homo sapiens] 47 5e-06
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens] 33 0.061
gi|18426915 drebrin 1 isoform a [Homo sapiens] 31 0.30
gi|6631112 synaptogyrin 3 [Homo sapiens] 28 2.0
gi|118572603 ubinuclein 1 [Homo sapiens] 27 4.4
gi|118572601 ubinuclein 1 [Homo sapiens] 27 4.4
gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens] 27 5.7
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 26 9.7
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 26 9.7
gi|163310763 serine/threonine kinase 32A isoform 1 [Homo sapiens] 26 9.7
>gi|21624607 coactosin-like 1 [Homo sapiens]
Length = 142
Score = 285 bits (730), Expect = 7e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 120
FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 120
Query: 121 EEDFIKSELKKAGGANYDAQTE 142
EEDFIKSELKKAGGANYDAQTE
Sbjct: 121 EEDFIKSELKKAGGANYDAQTE 142
>gi|171906575 drebrin-like isoform c [Homo sapiens]
Length = 439
Score = 47.0 bits (110), Expect = 5e-06
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 9 ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDDVRLFAFVRFT 65
A + AY V + S W F Y+G++ V G + +++ ++AF R
Sbjct: 11 ALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVK 70
Query: 66 TGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFI 125
D S KF LI W GE V+ +++ + + + ++ +++E + I
Sbjct: 71 --DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECI 128
Query: 126 KSELKKAGGANYDAQTE 142
++ KA GANY E
Sbjct: 129 MEKVAKASGANYSFHKE 145
>gi|62198235 drebrin-like isoform b [Homo sapiens]
Length = 430
Score = 47.0 bits (110), Expect = 5e-06
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 9 ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDDVRLFAFVRFT 65
A + AY V + S W F Y+G++ V G + +++ ++AF R
Sbjct: 11 ALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVK 70
Query: 66 TGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFI 125
D S KF LI W GE V+ +++ + + + ++ +++E + I
Sbjct: 71 --DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECI 128
Query: 126 KSELKKAGGANYDAQTE 142
++ KA GANY E
Sbjct: 129 MEKVAKASGANYSFHKE 145
>gi|21361670 drebrin-like isoform a [Homo sapiens]
Length = 431
Score = 47.0 bits (110), Expect = 5e-06
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 9 ACRAAYNLVRDDGSAVIWVTFKYDGSTI---VPGEQGAEYQHFIQQCTDDVRLFAFVRFT 65
A + AY V + S W F Y+G++ V G + +++ ++AF R
Sbjct: 11 ALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVK 70
Query: 66 TGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFI 125
D S KF LI W GE V+ +++ + + + ++ +++E + I
Sbjct: 71 --DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECI 128
Query: 126 KSELKKAGGANYDAQTE 142
++ KA GANY E
Sbjct: 129 MEKVAKASGANYSFHKE 145
>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
Length = 2694
Score = 33.5 bits (75), Expect = 0.061
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 56 VRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVIS 115
VRLF +F G+ + K S+ L+ +N+S + K +D+ +E + +FA V S
Sbjct: 1268 VRLFLKAKFENGNTLHKHSRAVLMKDNDKNMS-TEDTKKNSDEKTDEEKITSFASANVSS 1326
Query: 116 DRKELEE 122
D+ LE+
Sbjct: 1327 DQWSLED 1333
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 31.2 bits (69), Expect = 0.30
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 12 AAYNLVRDDGSAVIWVTFKY-DGST----IVPGEQGAEYQ--HFIQQCTDDVRLFAFVRF 64
AAY V + SA W + Y DGS GE G + HF Q ++ F
Sbjct: 15 AAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFENQKV----MYGFC-- 68
Query: 65 TTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQ 106
+ D+ + K+ LI W+GE+V ++ + V E Q
Sbjct: 69 SVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQ 110
>gi|6631112 synaptogyrin 3 [Homo sapiens]
Length = 229
Score = 28.5 bits (62), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 74 SKFALITWIGENVSGLQRAKTGTDKTL 100
S F++++W+ V LQR + GTD +L
Sbjct: 153 SFFSILSWVALTVKALQRFRLGTDMSL 179
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 71 SKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELE 121
SK+SKF+ + N S ++ K + VKE+++ F KE ++E E
Sbjct: 215 SKKSKFSKAGFTALNASKEKKKKKYSGALSVKEMLKKFQKEKEAQKKREEE 265
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 71 SKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELE 121
SK+SKF+ + N S ++ K + VKE+++ F KE ++E E
Sbjct: 215 SKKSKFSKAGFTALNASKEKKKKKYSGALSVKEMLKKFQKEKEAQKKREEE 265
>gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens]
Length = 233
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 74 SKFALITWIGENVSGLQRAKTGTDKTLVKE 103
S F++ TW G+ V QR + G D L +
Sbjct: 154 SFFSIFTWAGQAVLAFQRYQIGADSALFSQ 183
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 26.2 bits (56), Expect = 9.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 40 EQGAEYQHFIQQCTD 54
+ A+YQHF+Q C D
Sbjct: 1316 DDSADYQHFLQDCVD 1330
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 26.2 bits (56), Expect = 9.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 40 EQGAEYQHFIQQCTD 54
+ A+YQHF+Q C D
Sbjct: 879 DDSADYQHFLQDCVD 893
>gi|163310763 serine/threonine kinase 32A isoform 1 [Homo sapiens]
Length = 396
Score = 26.2 bits (56), Expect = 9.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 100 LVKEVVQNFAKEFVISDRKELEEDFIKSELKKAGGANYDAQTE 142
L++E + + KEF+I +R+++ DF K + A D Q E
Sbjct: 347 LLQEHLDSVQKEFIIFNREKVNRDFNKRQPNLALEQTKDPQGE 389
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,787,177
Number of Sequences: 37866
Number of extensions: 173182
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 15
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.