Search of human proteins with 213972615

Search of human proteins with 213972615

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|213972615 ATP binding domain 4 isoform 2 [Homo sapiens]
         (165 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|213972615 ATP binding domain 4 isoform 2 [Homo sapiens]            336   5e-93
gi|18087809 ATP binding domain 4 isoform 1 [Homo sapiens]             216   9e-57
gi|109452589 family with sequence similarity 98, member B isofor...    29   1.6  
gi|109452587 family with sequence similarity 98, member B isofor...    29   1.6  
gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens]             28   4.7  
gi|222080070 pleckstrin homology domain-containing family G memb...    27   6.2  
gi|222080068 pleckstrin homology domain-containing family G memb...    27   6.2  
gi|222080066 pleckstrin homology domain-containing family G memb...    27   6.2  
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ...    27   6.2  
gi|239747088 PREDICTED: MAFF interacting protein [Homo sapiens]        27   8.0  

>gi|213972615 ATP binding domain 4 isoform 2 [Homo sapiens]
          Length = 165

 Score =  336 bits (862), Expect = 5e-93
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL 60
           MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL
Sbjct: 1   MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL 60

Query: 61  YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVKGITRMTLLAEYDALNL 120
           YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVKGITRMTLLAEYDALNL
Sbjct: 61  YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVKGITRMTLLAEYDALNL 120

Query: 121 QDFHMHLKVGSQAIVYRTPNELCTHSKFDKHTFPPFISEIAKCEV 165
           QDFHMHLKVGSQAIVYRTPNELCTHSKFDKHTFPPFISEIAKCEV
Sbjct: 121 QDFHMHLKVGSQAIVYRTPNELCTHSKFDKHTFPPFISEIAKCEV 165


>gi|18087809 ATP binding domain 4 isoform 1 [Homo sapiens]
          Length = 267

 Score =  216 bits (549), Expect = 9e-57
 Identities = 111/147 (75%), Positives = 123/147 (83%), Gaps = 6/147 (4%)

Query: 1   MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL 60
           MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL
Sbjct: 1   MRVAALISGGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDL 60

Query: 61  YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVK------GITRMTLLAE 114
           YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVK      GI+   +L++
Sbjct: 61  YAEAMALPLYRRTIRGRSLDTRQVYTKCEGDEVEDLYELLKLVKEKEEVEGISVGAILSD 120

Query: 115 YDALNLQDFHMHLKVGSQAIVYRTPNE 141
           Y  + +++    L +   A +++   E
Sbjct: 121 YQRIRVENVCKRLNLQPLAYLWQRNQE 147


>gi|109452589 family with sequence similarity 98, member B isoform
          2 [Homo sapiens]
          Length = 330

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 9  GGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVG 54
          GG  S      CI  G QI +L NL  +    G D+L+S+  +  G
Sbjct: 41 GGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISG 86


>gi|109452587 family with sequence similarity 98, member B isoform
          1 [Homo sapiens]
          Length = 433

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 9  GGKDSCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVG 54
          GG  S      CI  G QI +L NL  +    G D+L+S+  +  G
Sbjct: 41 GGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISG 86


>gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens]
          Length = 507

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 93  VEDLYELLKLVKGITRMTLLAEYDALNLQDFHMHLK 128
           V +L EL K +  +    L AE    NL+D HM L+
Sbjct: 438 VSELEELYKSITALWEKLLQAEQSLHNLEDIHMSLE 473


>gi|222080070 pleckstrin homology domain-containing family G member
           6 isoform b [Homo sapiens]
          Length = 758

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 94  EDLYELLKL----VKGITRMTLLAEYDALNLQDFHMHLKVGSQAIVYRTPNELCTHSKFD 149
           E L+ELL      V+ +  MT L     LNLQ   + ++V ++ +    P+ + TH  F 
Sbjct: 132 EALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFGNVPSLIRTHRSFW 191

Query: 150 KHTFPPFISE 159
                P + E
Sbjct: 192 DEVLGPTLEE 201


>gi|222080068 pleckstrin homology domain-containing family G member
           6 isoform a [Homo sapiens]
          Length = 790

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 94  EDLYELLKL----VKGITRMTLLAEYDALNLQDFHMHLKVGSQAIVYRTPNELCTHSKFD 149
           E L+ELL      V+ +  MT L     LNLQ   + ++V ++ +    P+ + TH  F 
Sbjct: 164 EALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFGNVPSLIRTHRSFW 223

Query: 150 KHTFPPFISE 159
                P + E
Sbjct: 224 DEVLGPTLEE 233


>gi|222080066 pleckstrin homology domain-containing family G member
           6 isoform a [Homo sapiens]
          Length = 790

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 94  EDLYELLKL----VKGITRMTLLAEYDALNLQDFHMHLKVGSQAIVYRTPNELCTHSKFD 149
           E L+ELL      V+ +  MT L     LNLQ   + ++V ++ +    P+ + TH  F 
Sbjct: 164 EALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFGNVPSLIRTHRSFW 223

Query: 150 KHTFPPFISE 159
                P + E
Sbjct: 224 DEVLGPTLEE 233


>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
            [Homo sapiens]
          Length = 2671

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 56   HAIDLYAEAMALPLYRRTIRGRSLDTRQVYTKCEGD 91
            H ID  + A+ +P+ +R  + RS DTR++  +  G+
Sbjct: 1606 HFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGN 1641


>gi|239747088 PREDICTED: MAFF interacting protein [Homo sapiens]
          Length = 445

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 93  VEDLYELLKLVKGITRMTLLAEYDALNLQDFHMHLK 128
           V ++ EL K +  +    L AE    NL+D HM L+
Sbjct: 376 VSEVEELYKSITALREKLLQAEQSLRNLKDIHMSLE 411


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,805,552
Number of Sequences: 37866
Number of extensions: 206819
Number of successful extensions: 404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 10
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.