Search of human proteins with 21361535

Search of human proteins with 21361535

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361535 lethal, Chr 7, Rinchik 6 [Homo sapiens]
         (197 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361535 lethal, Chr 7, Rinchik 6 [Homo sapiens]                   399   e-111
gi|4507397 transcription factor 2 [Homo sapiens]                       28   3.9  
gi|31542860 gastrin-releasing peptide isoform 1 preproprotein [H...    27   8.6  
gi|60498999 gastrin-releasing peptide isoform 3 preproprotein [H...    27   8.6  
gi|60498997 gastrin-releasing peptide isoform 2 preproprotein [H...    27   8.6  
gi|105554437 forkhead box B1 [Homo sapiens]                            27   8.6  

>gi|21361535 lethal, Chr 7, Rinchik 6 [Homo sapiens]
          Length = 197

 Score =  399 bits (1024), Expect = e-111
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
           MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1   MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPD 60

Query: 61  SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
           SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS
Sbjct: 61  SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120

Query: 121 MAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180
           MAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 MAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180

Query: 181 YENFQRRLAQNPLFWKT 197
           YENFQRRLAQNPLFWKT
Sbjct: 181 YENFQRRLAQNPLFWKT 197


>gi|4507397 transcription factor 2 [Homo sapiens]
          Length = 557

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 95  HPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGNAAVSSVDSF--TQFTQKM 145
           +P  + N++ TP    + I+  L  S AQ  PV N+   S+ +    QF+Q++
Sbjct: 426 NPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVAGSLAALQPVQFSQQL 478


>gi|31542860 gastrin-releasing peptide isoform 1 preproprotein
          [Homo sapiens]
          Length = 148

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 44 IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLK 88
          +P P G G  +   YP  N   V  L+G  + G+ S++ +   LK
Sbjct: 24 VPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGSLK 68


>gi|60498999 gastrin-releasing peptide isoform 3 preproprotein
          [Homo sapiens]
          Length = 138

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 44 IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLK 88
          +P P G G  +   YP  N   V  L+G  + G+ S++ +   LK
Sbjct: 24 VPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGSLK 68


>gi|60498997 gastrin-releasing peptide isoform 2 preproprotein
          [Homo sapiens]
          Length = 141

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 44 IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLK 88
          +P P G G  +   YP  N   V  L+G  + G+ S++ +   LK
Sbjct: 24 VPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGSLK 68


>gi|105554437 forkhead box B1 [Homo sapiens]
          Length = 325

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 78  PSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGN 129
           P+A + + G+    G +HPF   NI+        G++   +  +    P+ N
Sbjct: 151 PAAAYNLGGVAQPSGFKHPFAIENIIAREYKMPGGLAFSAMQPVPAAYPLPN 202


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,289,760
Number of Sequences: 37866
Number of extensions: 313699
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.