Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 209862743

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|209862743 tetratricopeptide repeat domain 39C isoform 1
[Homo sapiens]
         (583 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209862743 tetratricopeptide repeat domain 39C isoform 1 [Homo...  1163   0.0  
gi|116256462 tetratricopeptide repeat domain 39C isoform 2 [Homo...  1044   0.0  
gi|22749191 tetratricopeptide repeat domain 39B [Homo sapiens]        199   4e-51
gi|221307588 tetratricopeptide repeat domain 39A isoform 1 [Homo...   171   2e-42
gi|122937436 tetratricopeptide repeat domain 39A isoform 2 [Homo...   168   1e-41
gi|148529023 hypothetical protein LOC23172 [Homo sapiens]              34   0.32 
gi|217416374 hypothetical protein LOC92749 [Homo sapiens]              33   0.95 
gi|210147462 von Willebrand factor A domain containing 5B1 [Homo...    32   1.2  
gi|218563749 ArfGAP with coiled-coil, ankyrin repeat and PH doma...    30   4.7  
gi|4506519 regulator of G-protein signalling 5 [Homo sapiens]          30   6.1  
gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens]      30   6.1  
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]      30   6.1  
gi|239755530 PREDICTED: similar to hCG2036644 [Homo sapiens]           30   6.1  
gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo ...    30   6.1  
gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo ...    30   6.1  
gi|19424126 diamine N-acetyltransferase 2 [Homo sapiens]               30   6.1  
gi|156119621 inhibitor of DNA binding 3 [Homo sapiens]                 30   6.1  

>gi|209862743 tetratricopeptide repeat domain 39C isoform 1 [Homo
           sapiens]
          Length = 583

 Score = 1163 bits (3009), Expect = 0.0
 Identities = 583/583 (100%), Positives = 583/583 (100%)

Query: 1   MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSP 60
           MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSP
Sbjct: 1   MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSP 60

Query: 61  LMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRK 120
           LMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRK
Sbjct: 61  LMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRK 120

Query: 121 SAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQ 180
           SAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQ
Sbjct: 121 SAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQ 180

Query: 181 ELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKI 240
           ELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKI
Sbjct: 181 ELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKI 240

Query: 241 INLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEA 300
           INLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEA
Sbjct: 241 INLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEA 300

Query: 301 KEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIG 360
           KEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIG
Sbjct: 301 KEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIG 360

Query: 361 WCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKR 420
           WCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKR
Sbjct: 361 WCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKR 420

Query: 421 KNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDD 480
           KNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDD
Sbjct: 421 KNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDD 480

Query: 481 SSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKP 540
           SSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKP
Sbjct: 481 SSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKP 540

Query: 541 ETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ 583
           ETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ
Sbjct: 541 ETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ 583


>gi|116256462 tetratricopeptide repeat domain 39C isoform 2 [Homo
           sapiens]
          Length = 522

 Score = 1044 bits (2700), Expect = 0.0
 Identities = 522/522 (100%), Positives = 522/522 (100%)

Query: 62  MSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKS 121
           MSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKS
Sbjct: 1   MSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKS 60

Query: 122 APSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQE 181
           APSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQE
Sbjct: 61  APSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQE 120

Query: 182 LYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKII 241
           LYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKII
Sbjct: 121 LYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKII 180

Query: 242 NLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAK 301
           NLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAK
Sbjct: 181 NLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAK 240

Query: 302 EILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGW 361
           EILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGW
Sbjct: 241 EILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGW 300

Query: 362 CSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKRK 421
           CSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKRK
Sbjct: 301 CSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKRK 360

Query: 422 NNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDS 481
           NNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDS
Sbjct: 361 NNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDS 420

Query: 482 SVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPE 541
           SVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPE
Sbjct: 421 SVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPE 480

Query: 542 TVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ 583
           TVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ
Sbjct: 481 TVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVPQ 522


>gi|22749191 tetratricopeptide repeat domain 39B [Homo sapiens]
          Length = 616

 Score =  199 bits (507), Expect = 4e-51
 Identities = 147/598 (24%), Positives = 275/598 (45%), Gaps = 64/598 (10%)

Query: 6   QQRPRRRDDGDSDAAAAAAAPLQDA-ELALAGINMLLNNGFRESDQLFKQYRNHSPLMSF 64
           QQ PR+R      ++++    L+   E     +N+ L+N F ++ +L + +   S   + 
Sbjct: 45  QQAPRQRGASTVSSSSSTKVDLKSGLEECAVALNLFLSNKFTDALELLRPWAKESMYHAL 104

Query: 65  GASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCES--EEAGVIETIKNKIKKNVDVRKSA 122
           G S +  L A++TFE++ +Q     +K   + C+   ++  V+E+  + + +    + S 
Sbjct: 105 GYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLSE 164

Query: 123 PSMVDRLQRQIIIADCQVYLAVLSFVKQE-LSAYIKGGWILRKAWKIYNKCYLDINALQE 181
             M      +I  A+C +  A L+FV+ E +  +IKGG  +R +++IY +C   ++ L E
Sbjct: 165 EEM----HAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKEC---LSILHE 217

Query: 182 LYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKII 241
           + + KL                     +E     +G V  G G F+L +S++P  +++++
Sbjct: 218 IQKNKL--------------------QQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLL 257

Query: 242 NLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAK 301
             +GF G+R  GL  L   +  + M++ L  L +L +HT    + +L     +  + EA+
Sbjct: 258 EFIGFSGNRELGLLQLREGASGRSMRSALCCLTILAFHT----YISLILGTGEVNVAEAE 313

Query: 302 EILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGW 361
            +L      +PN SL +F+  RI+ L+  +  A   F   + +  + ++  H+C +E+ W
Sbjct: 314 RLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVFQKCVSVQEEWKQFHHLCYWELMW 373

Query: 362 CSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVD------GAQIVFKEVQ 415
            ++ + N+  A+   + L  ES+WS+  Y +L A       + D          +F++V 
Sbjct: 374 INVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVATNENVVTLFRQVD 433

Query: 416 KLFKR---KNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPN----- 467
            L +R   K+   E+F+V+KA R+    P     +L ++E++Y+W      S        
Sbjct: 434 SLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSEN 493

Query: 468 -----------LQRMSQACHEVDDSSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDEL 516
                      LQ  +     VDD  +V    LL G   K L     A   +   V+ E 
Sbjct: 494 LLVTVEKAEAALQSQNFNSFSVDDECLV---KLLKGCCLKNLQRPLQAELCYNHVVESEK 550

Query: 517 CRQNNLYVQPYACYELGCLLLDKPETVGRGRALLLQAKEDFSGYDFENRLHVRIHAAL 574
             + + Y+ P+  +EL  L   + E + +    L  A+ ++  Y  E+RLH RI AAL
Sbjct: 551 LLKYDHYLVPFTLFELASLYKSQGE-IDKAIKFLETARNNYKDYSLESRLHFRIQAAL 607


>gi|221307588 tetratricopeptide repeat domain 39A isoform 1 [Homo
           sapiens]
          Length = 581

 Score =  171 bits (432), Expect = 2e-42
 Identities = 143/586 (24%), Positives = 265/586 (45%), Gaps = 65/586 (11%)

Query: 15  GDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNA 74
           G SD     ++  +  +  +  +++ L N F E+    K     S   S   + +  + A
Sbjct: 13  GKSDRRTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQA 72

Query: 75  MMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQII 134
           MMTF+ + + LA + +K  + LC+        ++ +     V+         + +  ++ 
Sbjct: 73  MMTFDPQDILLAGNMMKEAQMLCQRHRRK--SSVTDSFSSLVNRPTLGQFTEEEIHAEVC 130

Query: 135 IADCQVYLAVLSFVKQE-LSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLT 193
            A+C +  A L+F++ E + ++IKGG  +R +++ Y +  LD       Y K        
Sbjct: 131 YAECLLQRAALTFLQDENMVSFIKGGIKVRNSYQTYKE--LDSLVQSSQYCK-------- 180

Query: 194 SDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQG 253
                +NH              +G V  G G F+L +SM+P  +L+++  +GF G++  G
Sbjct: 181 ----GENH-----------PHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYG 225

Query: 254 LSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPN 313
           L  L   +     ++ L  + LL YHT +   F L G+ N   ++EA+++L      YP 
Sbjct: 226 LLQLEEGASGHSFRSVLCVMLLLCYHTFLT--FVL-GTGN-VNIEEAEKLLKPYLNRYPK 281

Query: 314 SSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGWCSMIELNFKDAF 373
            ++F+FF GRI+ ++  I++A+  F    E     ++  H+C +E+ WC   +  +K ++
Sbjct: 282 GAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSY 341

Query: 374 DSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKR----------KNN 423
              + L  E+ WS+  Y Y+ A      G  D       EV+ LF+           K+ 
Sbjct: 342 FYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVE-LFRAVPGLKLKIAGKSL 400

Query: 424 QIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKAL------PNCSFPNLQRMSQA--- 474
             E+F+++K+ R+    P      + ++E++Y+W         P  +   L+ +++A   
Sbjct: 401 PTEKFAIRKSRRYFSSNPIS--LPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEM 458

Query: 475 -------CHEVDDSSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPY 527
                   + VDD  +V    LL G   K LG  ++A + F+    +E   + + Y+ P 
Sbjct: 459 LEKGPENEYSVDDECLV---KLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPN 515

Query: 528 ACYELGCLLLDKPETVGRGRALLLQAKEDFSGYDFENRLHVRIHAA 573
           A  EL  LL+++         LL  AK+++  Y  E+R H RI AA
Sbjct: 516 ALLELALLLMEQDRN-EEAIKLLESAKQNYKNYSMESRTHFRIQAA 560


>gi|122937436 tetratricopeptide repeat domain 39A isoform 2 [Homo
           sapiens]
          Length = 578

 Score =  168 bits (426), Expect = 1e-41
 Identities = 140/567 (24%), Positives = 258/567 (45%), Gaps = 65/567 (11%)

Query: 34  LAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTT 93
           +  +++ L N F E+    K     S   S   + +  + AMMTF+ + + LA + +K  
Sbjct: 29  MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEA 88

Query: 94  EKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQE-L 152
           + LC+        ++ +     V+         + +  ++  A+C +  A L+F++ E +
Sbjct: 89  QMLCQRHRRK--SSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQDENM 146

Query: 153 SAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESL 212
            ++IKGG  +R +++ Y +  LD       Y K             +NH           
Sbjct: 147 VSFIKGGIKVRNSYQTYKE--LDSLVQSSQYCK------------GENH----------- 181

Query: 213 NRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLAT 272
              +G V  G G F+L +SM+P  +L+++  +GF G++  GL  L   +     ++ L  
Sbjct: 182 PHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCV 241

Query: 273 LALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQIN 332
           + LL YHT +   F L G+ N   ++EA+++L      YP  ++F+FF GRI+ ++  I+
Sbjct: 242 MLLLCYHTFLT--FVL-GTGN-VNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNID 297

Query: 333 SALTSFHTALELAVDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAY 392
           +A+  F    E     ++  H+C +E+ WC   +  +K ++   + L  E+ WS+  Y Y
Sbjct: 298 AAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIY 357

Query: 393 LTAVCQGATGDVDGAQIVFKEVQKLFKR----------KNNQIEQFSVKKAERFRKQTPT 442
           + A      G  D       EV+ LF+           K+   E+F+++K+ R+    P 
Sbjct: 358 MKAAYLSMFGKEDHKPFGDDEVE-LFRAVPGLKLKIAGKSLPTEKFAIRKSRRYFSSNPI 416

Query: 443 KALCVLASIEVLYLWKAL------PNCSFPNLQRMSQA----------CHEVDDSSVVGL 486
                + ++E++Y+W         P  +   L+ +++A           + VDD  +V  
Sbjct: 417 S--LPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEMLEKGPENEYSVDDECLV-- 472

Query: 487 KYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPETVGRG 546
             LL G   K LG  ++A + F+    +E   + + Y+ P A  EL  LL+++       
Sbjct: 473 -KLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPNALLELALLLMEQDRN-EEA 530

Query: 547 RALLLQAKEDFSGYDFENRLHVRIHAA 573
             LL  AK+++  Y  E+R H RI AA
Sbjct: 531 IKLLESAKQNYKNYSMESRTHFRIQAA 557


>gi|148529023 hypothetical protein LOC23172 [Homo sapiens]
          Length = 415

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 80  EEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQII 134
           +EK+Q  C D++ +E++ ES +A V     NK+++ +  RK+      RLQ+ ++
Sbjct: 217 QEKVQAVCADVEKSERVVESCQAEV-----NKLRRQITQRKNEKEQERRLQQAVL 266


>gi|217416374 hypothetical protein LOC92749 [Homo sapiens]
          Length = 740

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 73  NAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQ 132
           N    FE E+ +L   + K  E+  ++  A  +E + N++KK  D  K       +L RQ
Sbjct: 224 NIEKAFEVERQELLASNKKKWEQALQAHNAKELEYLNNRMKKVEDYEK-------QLNRQ 276

Query: 133 IIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESL 192
             I DC+ Y  +   ++Q++              +I  +      A+ +L Q+KL     
Sbjct: 277 -RIWDCEEYNMIKIKLEQDV--------------QILEQQLQQRKAIYQLNQEKLEYNLQ 321

Query: 193 TSDAANDNHIVAEGVSEESLNRL 215
                ++   V +   +  +NRL
Sbjct: 322 VLKKRDEESTVIKSQQKRKINRL 344


>gi|210147462 von Willebrand factor A domain containing 5B1 [Homo
           sapiens]
          Length = 1215

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 27  LQDAELALAGINMLLNNGFRESDQLFKQYRNHSP-----LMSFGASFVSFLNAMMTFEEE 81
           L D   +++GI+M      R  D +    ++  P     ++ FG++F S   +  T+ E+
Sbjct: 365 LIDRSSSMSGISM-----HRVKDAMLVALKSLMPACLFNIIGFGSTFKSLFPSSQTYSED 419

Query: 82  KMQLACDDLK 91
            + +ACDD++
Sbjct: 420 SLAMACDDIQ 429


>gi|218563749 ArfGAP with coiled-coil, ankyrin repeat and PH domains
           3 [Homo sapiens]
          Length = 834

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 11/126 (8%)

Query: 67  SFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMV 126
           S +SF++A  +F ++   L        +KL    +  VI++    ++K    RK A    
Sbjct: 189 SMLSFMHAQSSFFQQGYSLLHQLDPYMKKLAAELDQLVIDSA---VEKREMERKHAA--- 242

Query: 127 DRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKA---WKIYNKCYLDINALQELY 183
             +Q++ ++ D     + + F     S  +  G++ ++A   +K +N+ +  I   Q +Y
Sbjct: 243 --IQQRTLLQDFSYDESKVEFDVDAPSGVVMEGYLFKRASNAFKTWNRRWFSIQNSQLVY 300

Query: 184 QKKLTE 189
           QKKL +
Sbjct: 301 QKKLKD 306


>gi|4506519 regulator of G-protein signalling 5 [Homo sapiens]
          Length = 181

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 41  LNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDD---LKTTEKLC 97
           L+   +  D L K  +N+  L    ASF SFL +  + E  +  +AC+D   +K+  K+ 
Sbjct: 55  LDEALQWRDSLDKLLQNNYGL----ASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMA 110

Query: 98  ESEEAGVIETIKNKIKKNVDV 118
           E  +    E I+ +  K V++
Sbjct: 111 EKAKQIYEEFIQTEAPKEVNI 131


>gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens]
          Length = 925

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 249 DRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSD---------------N 293
           + +  L ++++   +   +    T AL WY+  +R F++ D  D               N
Sbjct: 396 ESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLR-FYSTDEMDLDFTKLQRNMACCYLN 454

Query: 294 KAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQH 353
              LD+AKE + + E   P +    F+  +I  +E     AL +  T   +  D+    +
Sbjct: 455 LQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDN 514

Query: 354 VCLYEIGWCSMI 365
             + E G  +M+
Sbjct: 515 DLVAERGSPTML 526


>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
          Length = 940

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 249 DRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSD---------------N 293
           + +  L ++++   +   +    T AL WY+  +R F++ D  D               N
Sbjct: 411 ESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLR-FYSTDEMDLDFTKLQRNMACCYLN 469

Query: 294 KAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQH 353
              LD+AKE + + E   P +    F+  +I  +E     AL +  T   +  D+    +
Sbjct: 470 LQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDN 529

Query: 354 VCLYEIGWCSMI 365
             + E G  +M+
Sbjct: 530 DLVAERGSPTML 541


>gi|239755530 PREDICTED: similar to hCG2036644 [Homo sapiens]
          Length = 336

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 155 YIKGGWI-LRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLN 213
           YI+G  + L +  K   K Y  +N +    ++K+TE+ + S  A ++H   E VS   ++
Sbjct: 51  YIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVS-RLID 109

Query: 214 RLKGAVSFGYGLFHLC 229
            L+ A+    G  HLC
Sbjct: 110 ELQTAIKSNIG--HLC 123


>gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo
           sapiens]
          Length = 505

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 155 YIKGGWI-LRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLN 213
           YI+G  + L +  K   K Y  +N +    ++K+TE+ + S  A ++H   E VS   ++
Sbjct: 51  YIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVS-RLID 109

Query: 214 RLKGAVSFGYGLFHLC 229
            L+ A+    G  HLC
Sbjct: 110 ELQTAIKSNIG--HLC 123


>gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo
           sapiens]
          Length = 456

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 155 YIKGGWI-LRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLN 213
           YI+G  + L +  K   K Y  +N +    ++K+TE+ + S  A ++H   E VS   ++
Sbjct: 2   YIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVS-RLID 60

Query: 214 RLKGAVSFGYGLFHLC 229
            L+ A+    G  HLC
Sbjct: 61  ELQTAIKSNIG--HLC 74


>gi|19424126 diamine N-acetyltransferase 2 [Homo sapiens]
          Length = 170

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 184 QKKLTEESLTSDAANDNHIVAEGVSE--ESLNRLKGAVSFGYGLFHLCISMVPPNLLKII 241
           Q K++EE+L +D   DN      V+E   +  +L G    GYG+++   S      + + 
Sbjct: 33  QVKISEEALRADGFGDNPFYHCLVAEILPAPGKLLGPCVVGYGIYYFIYSTWKGRTIYLE 92

Query: 242 NLLGFPGDRLQGLSS 256
           ++   P  R QG+ S
Sbjct: 93  DIYVMPEYRGQGIGS 107


>gi|156119621 inhibitor of DNA binding 3 [Homo sapiens]
          Length = 119

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 529 CYELGCLLLDKPETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRELVP 582
           CYE  C L ++   + RGR     A+E  S  D  N  + R       LRELVP
Sbjct: 10  CYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSR-------LRELVP 56


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,511,378
Number of Sequences: 37866
Number of extensions: 865634
Number of successful extensions: 2250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2228
Number of HSP's gapped (non-prelim): 19
length of query: 583
length of database: 18,247,518
effective HSP length: 108
effective length of query: 475
effective length of database: 14,157,990
effective search space: 6725045250
effective search space used: 6725045250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press