Search of human proteins with 208609995

Search of human proteins with 208609995

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|208609995 methionine sulfoxide reductase A isoform c [Homo
sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|208609995 methionine sulfoxide reductase A isoform c [Homo sa...   413   e-116
gi|6912516 methionine sulfoxide reductase A isoform a [Homo sapi...   402   e-112
gi|208609993 methionine sulfoxide reductase A isoform b [Homo sa...   294   4e-80
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             33   0.19 
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]    30   1.6  
gi|4506885 semenogelin II precursor [Homo sapiens]                     29   2.2  
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho...    29   2.8  
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1...    27   8.2  
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    27   8.2  
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    27   8.2  
gi|10835099 organic anion transporting polypeptide A [Homo sapiens]    27   8.2  
gi|19913403 organic anion transporting polypeptide A [Homo sapiens]    27   8.2  

>gi|208609995 methionine sulfoxide reductase A isoform c [Homo
           sapiens]
          Length = 192

 Score =  413 bits (1062), Expect = e-116
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MCSEPKHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNP 60
           MCSEPKHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNP
Sbjct: 1   MCSEPKHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNP 60

Query: 61  TYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYP 120
           TYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYP
Sbjct: 61  TYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYP 120

Query: 121 TSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLG 180
           TSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLG
Sbjct: 121 TSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLG 180

Query: 181 GTGVSCPVGIKK 192
           GTGVSCPVGIKK
Sbjct: 181 GTGVSCPVGIKK 192


>gi|6912516 methionine sulfoxide reductase A isoform a [Homo
           sapiens]
          Length = 235

 Score =  402 bits (1032), Expect = e-112
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 6   KHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV 65
           KHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV
Sbjct: 49  KHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV 108

Query: 66  CSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ 125
           CSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ
Sbjct: 109 CSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ 168

Query: 126 MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS 185
           MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS
Sbjct: 169 MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS 228

Query: 186 CPVGIKK 192
           CPVGIKK
Sbjct: 229 CPVGIKK 235


>gi|208609993 methionine sulfoxide reductase A isoform b [Homo
           sapiens]
          Length = 195

 Score =  294 bits (752), Expect = 4e-80
 Identities = 147/187 (78%), Positives = 147/187 (78%), Gaps = 40/187 (21%)

Query: 6   KHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEV 65
           KHHVNGNRTVEPFPEGTQMAVF                                      
Sbjct: 49  KHHVNGNRTVEPFPEGTQMAVF-------------------------------------- 70

Query: 66  CSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ 125
             EKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ
Sbjct: 71  --EKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQ 128

Query: 126 MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS 185
           MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS
Sbjct: 129 MEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVS 188

Query: 186 CPVGIKK 192
           CPVGIKK
Sbjct: 189 CPVGIKK 195


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 9    VNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVY-STQVGFAGG-------YTSNP 60
            + G  TVEP PEG Q++ FG     G E  +W L   Y   +V   GG       YT+ P
Sbjct: 1367 LTGEFTVEPVPEGAQLS-FGNFAQLGHESFYWQLPETYQGDKVAAYGGKLRYTLSYTAGP 1425

Query: 61   TYKEVCS---EKTGHAEVVRVVYQ-----PEHMSFEELLK-VFWENHDPTQGMRQ 106
                +     + TG+  ++ V  Q     PE  S+E + +  FW   D     R+
Sbjct: 1426 QGSPLSDPDVQITGN-NIMLVASQPALQGPERRSYEIMFREEFWRRPDGQPATRE 1479


>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
          Length = 1460

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 64  EVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSA 123
           E  S      + + V+  PEH    +L K  WE     +GM Q + +  Q  S I  +S 
Sbjct: 790 EFISASCEQQQDISVMTIPEHSDINDLEKSVWE----LEGMPQ-DTYSQQLHSQIQESSL 844

Query: 124 KQMEAALSSKENYQKVLSEHGFGPITTDIRE 154
            Q++A  S +   Q  L E  F P  +   E
Sbjct: 845 NQIQAHSSDQLPLQSELKE--FEPSVSQTNE 873


>gi|4506885 semenogelin II precursor [Homo sapiens]
          Length = 582

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 62  YKEVCSEKTGHAEVVRVVYQPEHM-----------SFEELLKVFWENHDPTQGMRQGNDH 110
           Y+ V   +  H+  ++    P H            + ++ L V+ +N   T+ + Q  +H
Sbjct: 220 YQNVVDVREEHSSKLQTSLHPAHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEH 279

Query: 111 GTQYRSAIYPTSAKQMEAALSSKENYQKVLSE 142
           G +     YP+S  +       +++ QK +S+
Sbjct: 280 GRKAHKISYPSSRTEERQLHHGEKSVQKDVSK 311


>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
           sapiens]
          Length = 502

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 130 LSSKENYQKVLSEHGFGPITT---DIREGQTFYYAEDYHQQYLSKNPNGY 176
           LSS       L +    PI +   D+REG++ ++  D+HQ+   + P  +
Sbjct: 295 LSSSRRTSDSLHQQWLTPIPSRPWDLREGRSHHHYPDFHQELQDRGPKSW 344


>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
           [Homo sapiens]
          Length = 651

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 57  TSNPTYKEVCSEKTGHAEVVRVVYQ--PEHMSFEELLKVFWENHDPTQGMRQGNDHGTQY 114
           TSN    E+CSE + + + + +V Q   E ++F+  L+ + +N+     ++         
Sbjct: 229 TSNDPISEICSENSLNVDFLMLVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKYTKKDT 288

Query: 115 RSAIYPTSAKQMEAALSSKENYQKV 139
           +     +S  + E +  +K++ +KV
Sbjct: 289 KKNAKKSSDAESEDSKDAKKDSKKV 313


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 95  WENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIRE 154
           + N+ P QG ++G +HG    S  Y  S         S  NY+   +  G G      R 
Sbjct: 768 YSNYGPPQGKQKGYNHG--QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGG-----RS 820

Query: 155 GQTFYYAEDYHQQYLSKNPNGYCGLGG 181
           G        Y     S NP  + G GG
Sbjct: 821 G-----GNSYGSGGASYNPGSHGGYGG 842


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 95  WENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIRE 154
           + N+ P QG ++G +HG    S  Y  S         S  NY+   +  G G      R 
Sbjct: 764 YSNYGPPQGKQKGYNHG--QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGG-----RS 816

Query: 155 GQTFYYAEDYHQQYLSKNPNGYCGLGG 181
           G        Y     S NP  + G GG
Sbjct: 817 G-----GNSYGSGGASYNPGSHGGYGG 838


>gi|10835099 organic anion transporting polypeptide A [Homo sapiens]
          Length = 670

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 11  GNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKT 70
           G +   P   G    V G+GCF  +   F + +  Y + V  +G  +SN     +C E  
Sbjct: 80  GTKLHRPIMIGIGCVVMGLGCFLKSLPHFLMNQYEYESTVSVSGNLSSN---SFLCME-- 134

Query: 71  GHAEVVRVVYQPEHMSFEELLKVFW 95
              +++R    P   + +E+  + W
Sbjct: 135 NGTQILRPTQDPSECT-KEVKSLMW 158


>gi|19913403 organic anion transporting polypeptide A [Homo sapiens]
          Length = 670

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 11  GNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKT 70
           G +   P   G    V G+GCF  +   F + +  Y + V  +G  +SN     +C E  
Sbjct: 80  GTKLHRPIMIGIGCVVMGLGCFLKSLPHFLMNQYEYESTVSVSGNLSSN---SFLCME-- 134

Query: 71  GHAEVVRVVYQPEHMSFEELLKVFW 95
              +++R    P   + +E+  + W
Sbjct: 135 NGTQILRPTQDPSECT-KEVKSLMW 158


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,165,996
Number of Sequences: 37866
Number of extensions: 343267
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.