Guide to the Human Genome
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Name: PNPLA5 Sequence: fasta or formatted (429aa) NCBI GI: 20304127
Description:

patatin-like phospholipase domain containing 5

Referenced in:

Adipose Tissue
Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         31           2
 C cysteine            3.3         14           2
 D aspartate           4.2         18           1
 E glutamate           5.4         23           3
 F phenylalanine       4.9         21           2
 G glycine             7.0         30           2
 H histidine           2.8         12           2
 I isoleucine          3.7         16           1
 K lysine              2.3         10           2
 L leucine            13.5         58           3
 M methionine          0.9          4           1
 N asparagine          3.3         14           2
 P proline             8.4         36           2
 Q glutamine           4.7         20           2
 R arginine            6.3         27           2
 S serine              6.8         29           3
 T threonine           4.4         19           1
 V valine              6.1         26           2
 W tryptophan          2.6         11           2
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   patatin-like phospholipase domain containing 5 [Homo... 
PNPLA3                0.294   patatin-like phospholipase domain containing 3 [Homo...
PNPLA2                0.278   patatin-like phospholipase domain containing 2 [Homo...
PNPLA1                0.181   patatin-like phospholipase domain containing 1 isof...
PNPLA4                0.126   patatin-like phospholipase domain containing 4 [Hom...
PNPLA4                0.126   patatin-like phospholipase domain containing 4 [Homo...
PNPLA1                0.125   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.118   patatin-like phospholipase domain containing 1 isof...
LOC100293124          0.047   PREDICTED: similar to patatin-like phospholipase do...
ZNF629                0.010   zinc finger protein 629 
LOC100131706          0.006   PREDICTED: hypothetical protein 
LOC100131706          0.006   PREDICTED: hypothetical protein 
LOC100131706          0.006   PREDICTED: hypothetical protein 
NOTCH4                0.006   notch4 preproprotein 
PLVAP                 0.005   plasmalemma vesicle associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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