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Search of human proteins with 197313702
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197313702 torsin family 2, member A isoform d [Homo sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197313702 torsin family 2, member A isoform d [Homo sapiens] 158 8e-40
gi|145386578 torsin family 2, member A isoform a [Homo sapiens] 108 7e-25
gi|145386549 torsin family 2, member A isoform b [Homo sapiens] 108 7e-25
gi|197313700 torsin family 2, member A isoform c [Homo sapiens] 108 7e-25
gi|7706111 8D6 antigen [Homo sapiens] 31 0.18
gi|74027265 serine peptidase inhibitor, Kunitz type 1 isoform 2 ... 27 3.4
gi|4504329 serine peptidase inhibitor, Kunitz type 1 isoform 2 p... 27 3.4
gi|32313599 serine peptidase inhibitor, Kunitz type 1 isoform 1 ... 27 3.4
gi|33667030 myo-inositol oxygenase [Homo sapiens] 27 3.4
gi|167857792 programmed cell death 1 precursor [Homo sapiens] 27 4.5
gi|239757169 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo ... 26 5.9
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ... 26 5.9
gi|239746778 PREDICTED: hypothetical protein XP_002343847 [Homo ... 26 7.7
>gi|197313702 torsin family 2, member A isoform d [Homo sapiens]
Length = 72
Score = 158 bits (400), Expect = 8e-40
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPRE 60
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPRE
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPRE 60
Query: 61 PHCLWPLPLPLR 72
PHCLWPLPLPLR
Sbjct: 61 PHCLWPLPLPLR 72
>gi|145386578 torsin family 2, member A isoform a [Homo sapiens]
Length = 321
Score = 108 bits (271), Expect = 7e-25
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
>gi|145386549 torsin family 2, member A isoform b [Homo sapiens]
Length = 253
Score = 108 bits (271), Expect = 7e-25
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
Length = 242
Score = 108 bits (271), Expect = 7e-25
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
>gi|7706111 8D6 antigen [Homo sapiens]
Length = 282
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 33 LRCTLGAFC-----ECDFRPDLPEGSEELG 57
LRCTL C CD PD P+ S+ELG
Sbjct: 137 LRCTLSDDCIPLTWRCDGHPDCPDSSDELG 166
>gi|74027265 serine peptidase inhibitor, Kunitz type 1 isoform 2
precursor [Homo sapiens]
Length = 513
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 CTLGAFCECDFRPDLPEGSEE 55
C + +F ECD P+ P+ S+E
Sbjct: 330 CCIDSFLECDDTPNCPDASDE 350
>gi|4504329 serine peptidase inhibitor, Kunitz type 1 isoform 2
precursor [Homo sapiens]
Length = 513
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 CTLGAFCECDFRPDLPEGSEE 55
C + +F ECD P+ P+ S+E
Sbjct: 330 CCIDSFLECDDTPNCPDASDE 350
>gi|32313599 serine peptidase inhibitor, Kunitz type 1 isoform 1
precursor [Homo sapiens]
Length = 529
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 CTLGAFCECDFRPDLPEGSEE 55
C + +F ECD P+ P+ S+E
Sbjct: 346 CCIDSFLECDDTPNCPDASDE 366
>gi|33667030 myo-inositol oxygenase [Homo sapiens]
Length = 285
Score = 26.9 bits (58), Expect = 3.4
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 9 RPWGSLLGLL---GLVSAA------AAAWDLASLRCTLGA---FCECDFR--PDL--PEG 52
+ W L+GLL G V A A D + C A FC+ F+ PDL P
Sbjct: 113 KDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRY 172
Query: 53 SEELGPREPHC 63
S ELG +PHC
Sbjct: 173 STELGMYQPHC 183
>gi|167857792 programmed cell death 1 precursor [Homo sapiens]
Length = 288
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 48 DLPEGSEELGPREPHCLWPL 67
D P ++ L P + HC WPL
Sbjct: 269 DGPRSAQPLRPEDGHCSWPL 288
>gi|239757169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 849
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 6 RGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPREPHCLW 65
RGC+ GS + L L A W A LR L A C + D PE ++ H
Sbjct: 395 RGCQGLGSEILRLPL----ARPWIPAVLRRPLLAVCGTQAQIDSPESAKPKSILRAHDQL 450
Query: 66 PLPLPLR 72
LP LR
Sbjct: 451 QLPAGLR 457
>gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo
sapiens]
Length = 849
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 6 RGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPREPHCLW 65
RGC+ GS + L L A W A LR L A C + D PE ++ H
Sbjct: 395 RGCQGLGSEILRLPL----ARPWIPAVLRRPLLAVCGTQAQIDSPESAKPKSILRAHDQL 450
Query: 66 PLPLPLR 72
LP LR
Sbjct: 451 QLPAGLR 457
>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
sapiens]
Length = 977
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 6 RGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPEGSEELGPREPHCLW 65
RGC+ GS + L L A W A LR L A C + D PE ++ H
Sbjct: 395 RGCQGLGSEILRLPL----ARPWIPAVLRRPLLAVCGTQAQIDSPESAKPKSILRAHDQL 450
Query: 66 PLPLPLR 72
LP LR
Sbjct: 451 QLPAGLR 457
>gi|239746778 PREDICTED: hypothetical protein XP_002343847 [Homo
sapiens]
Length = 215
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 17 LLGLVSAAAAAWDLASLRCTLGA-FCECDFRPDLP 50
L GLV+ A W LRC G C F P P
Sbjct: 156 LAGLVAGAGCRWRALRLRCRHGRHLCRSPFLPASP 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,406,318
Number of Sequences: 37866
Number of extensions: 139170
Number of successful extensions: 373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 14
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.