Search of human proteins with 196123585

Search of human proteins with 196123585

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
neanderthalensis]
         (260 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196123585 cytochrome c oxidase subunit III [Homo sapiens nean...   555   e-158
gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]          552   e-158
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert...    32   0.72 
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]               31   0.95 
gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ...    31   0.95 
gi|30023836 cytochrome P450 4Z1 [Homo sapiens]                         30   2.1  
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]        30   2.8  
gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]         28   6.1  
gi|32171233 BCDIN3 domain containing [Homo sapiens]                    28   8.0  
gi|4507021 solute carrier family 4, anion exchanger, member 1 [H...    28   8.0  
gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]              28   8.0  

>gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
           neanderthalensis]
          Length = 260

 Score =  555 bits (1430), Expect = e-158
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTLLMLGLLTNTLTMYQWWRD 60
           MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTLLMLGLLTNTLTMYQWWRD
Sbjct: 1   MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTLLMLGLLTNTLTMYQWWRD 60

Query: 61  VTRESTYQGHHTPPVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
           VTRESTYQGHHTPPVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG
Sbjct: 61  VTRESTYQGHHTPPVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120

Query: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
           ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180

Query: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240
           YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240

Query: 241 YWHFVDVVWLFLYVSIYWWG 260
           YWHFVDVVWLFLYVSIYWWG
Sbjct: 241 YWHFVDVVWLFLYVSIYWWG 260


>gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]
          Length = 261

 Score =  552 bits (1423), Expect = e-158
 Identities = 258/260 (99%), Positives = 259/260 (99%)

Query: 1   MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTLLMLGLLTNTLTMYQWWRD 60
           MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHS TLLMLGLLTNTLTMYQWWRD
Sbjct: 1   MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRD 60

Query: 61  VTRESTYQGHHTPPVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
           VTRESTYQGHHTPPVQKGLRYGM+LFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG
Sbjct: 61  VTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120

Query: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
           ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180

Query: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240
           YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240

Query: 241 YWHFVDVVWLFLYVSIYWWG 260
           YWHFVDVVWLFLYVSIYWWG
Sbjct: 241 YWHFVDVVWLFLYVSIYWWG 260


>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
           neanderthalensis]
          Length = 603

 Score = 31.6 bits (70), Expect = 0.72
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 111 QLGGH-WPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILL 169
           QLG H W P+ +    P+   LL++S ++ +GV +    H L EN  + +IQ L  T+ L
Sbjct: 226 QLGLHPWLPSAMEGPTPVSA-LLHSSTMVVAGVFLLIRFHPLAEN--SPLIQTL--TLCL 280

Query: 170 GLYFTLLQA 178
           G   TL  A
Sbjct: 281 GAITTLFAA 289


>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
          Length = 603

 Score = 31.2 bits (69), Expect = 0.95
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 111 QLGGH-WPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILL 169
           QLG H W P+ +    P+   LL++S ++ +G+ +    H L EN  + +IQ L  T+ L
Sbjct: 226 QLGLHPWLPSAMEGPTPVSA-LLHSSTMVVAGIFLLIRFHPLAEN--SPLIQTL--TLCL 280

Query: 170 GLYFTLLQA 178
           G   TL  A
Sbjct: 281 GAITTLFAA 289


>gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5
           [Homo sapiens]
          Length = 388

 Score = 31.2 bits (69), Expect = 0.95
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 48  LTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLA 107
           L ++ T  Q    +  + TY  +HT P +     G +    SE+    G  +     S  
Sbjct: 89  LNHSETFLQTTTFLPEDFTYFANHTCPERLPSMKGPIDINMSEI----GMDYIHELFSKD 144

Query: 108 PTPQLGGHWPPTGITP 123
           PT +LGGHW P+   P
Sbjct: 145 PTIKLGGHWKPSDCMP 160


>gi|30023836 cytochrome P450 4Z1 [Homo sapiens]
          Length = 505

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 137 LLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDG 191
           LL  G SITW H S M          + I   L LY  ++  S   + P T  DG
Sbjct: 347 LLGDGSSITWEHLSQMP------YTTMCIKECLRLYAPVVNISRLLDKPITFPDG 395


>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
          Length = 186

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 117 PPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLL 176
           P  G+   +      +++S   +     +W  H L++ NR  ++ + L+ +LLGL   L+
Sbjct: 73  PDGGVGTSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILV 131

Query: 177 QASEYFESPFTISDGIYGSTFFV 199
                     T S G+  + FFV
Sbjct: 132 GVG----LEATPSPGVSSAIFFV 150


>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
          Length = 195

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 132 LNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDG 191
           +++S   +     +W  H L++ NR  ++ + L+ +LLGL   L+          T S G
Sbjct: 97  ISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILVGVG----LEATPSPG 151

Query: 192 IYGSTFFV 199
           +  + FFV
Sbjct: 152 VSSAIFFV 159


>gi|32171233 BCDIN3 domain containing [Homo sapiens]
          Length = 292

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   YHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTL 42
           Y +V+P PW    A +  L   GL  + HFHS  +
Sbjct: 192 YLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAI 226


>gi|4507021 solute carrier family 4, anion exchanger, member 1 [Homo
           sapiens]
          Length = 911

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 151 LMENNRNQM--IQALLITILLGLYFTLLQASEYFESPFTISDGIYGSTFFVATGFHGLHV 208
           L E  RNQM   + L+ T + G+ F LL A       F+    ++   FF     +GL  
Sbjct: 427 LGEKTRNQMGVSELLISTAVQGILFALLGAQPLLVVGFSGPLLVFEEAFFSFCETNGLEY 486

Query: 209 IIGSTFL 215
           I+G  ++
Sbjct: 487 IVGRVWI 493


>gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]
          Length = 478

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 74  PVQKGLRYGMVLFITSEVFFFAGFFWAFYHSSLA 107
           PV +G+  G+V F+++       FF  FYH+ L+
Sbjct: 410 PVPEGITCGVVTFLSNMFMGVLLFFLTFYHTELS 443


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.139    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,005,577
Number of Sequences: 37866
Number of extensions: 424060
Number of successful extensions: 1227
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.