Guide to the Human Genome
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Name: SPG21 Sequence: fasta or formatted (308aa) NCBI GI: 189217845
Description:

spastic paraplegia 21 isoform a

Referenced in:

T cells

Other entries for this name:
alt prot [281aa] spastic paraplegia 21 isoform b
alt mRNA [308aa] spastic paraplegia 21 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         20           2
 C cysteine            1.6          5           1
 D aspartate           6.5         20           4
 E glutamate           4.9         15           2
 F phenylalanine       5.8         18           2
 G glycine             5.8         18           2
 H histidine           2.9          9           1
 I isoleucine          5.8         18           2
 K lysine              5.2         16           2
 L leucine            11.0         34           2
 M methionine          2.9          9           2
 N asparagine          3.2         10           1
 P proline             5.2         16           2
 Q glutamine           4.2         13           1
 R arginine            4.2         13           2
 S serine              8.1         25           2
 T threonine           3.9         12           1
 V valine              6.2         19           1
 W tryptophan          1.9          6           1
 Y tyrosine            3.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spastic paraplegia 21 isoform a 
SPG21                 1.000   spastic paraplegia 21 isoform a 
SPG21                 0.875   spastic paraplegia 21 isoform b 
ABHD5                 0.012   abhydrolase domain containing 5 
FRMD4B                0.010   FERM domain containing 4B 
PLXNA1                0.008   plexin A1 
NUFIP2                0.008   nuclear fragile X mental retardation protein interac...
MIER3                 0.007   mesoderm induction early response 1, family member 3...
PLXNA2                0.007   plexin A2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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