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Search of human proteins with 189083849
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189083849 delta-aminolevulinic acid dehydratase [Homo
sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189083849 delta-aminolevulinic acid dehydratase [Homo sapiens] 667 0.0
gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens] 33 0.46
gi|31543174 transmembrane protein 86B [Homo sapiens] 32 1.0
gi|71274164 RAB15 effector protein [Homo sapiens] 31 1.3
gi|120953264 folliculin interacting protein 1 isoform 2 [Homo sa... 31 1.3
gi|120953291 folliculin interacting protein 1 isoform 1 [Homo sa... 31 1.3
gi|106049528 pyruvate carboxylase precursor [Homo sapiens] 31 1.3
gi|106049295 pyruvate carboxylase precursor [Homo sapiens] 31 1.3
gi|106049292 pyruvate carboxylase precursor [Homo sapiens] 31 1.3
gi|16507200 ubiquitin specific protease 28 [Homo sapiens] 30 2.3
gi|47132537 phosphodiesterase 8A isoform 2 [Homo sapiens] 28 8.6
gi|27734721 phosphodiesterase 8A isoform 1 [Homo sapiens] 28 8.6
gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo sapiens] 28 8.6
gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens] 28 8.6
gi|153792298 piwi-like 3 [Homo sapiens] 28 8.6
>gi|189083849 delta-aminolevulinic acid dehydratase [Homo sapiens]
Length = 330
Score = 667 bits (1722), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MQPQSVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR 60
MQPQSVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR
Sbjct: 1 MQPQSVLHSGYFHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR 60
Query: 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120
LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD
Sbjct: 61 LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120
Query: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180
Query: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR 240
ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR 240
Query: 241 DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAV 300
DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAV
Sbjct: 241 DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAV 300
Query: 301 LEAMTAFRRAGADIIITYYTPQLLQWLKEE 330
LEAMTAFRRAGADIIITYYTPQLLQWLKEE
Sbjct: 301 LEAMTAFRRAGADIIITYYTPQLLQWLKEE 330
>gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]
Length = 526
Score = 32.7 bits (73), Expect = 0.46
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 116 LVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAE 152
L A DV L P T+H H L ++ + R E+SRQ+L E
Sbjct: 300 LHAVDVTLDPDTAHPHLFLYEDSKSVRLEDSRQKLPE 336
>gi|31543174 transmembrane protein 86B [Homo sapiens]
Length = 226
Score = 31.6 bits (70), Expect = 1.0
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 248 MLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHG-AQAGA-------FDLKAA 299
++++ PG PYL +V + + LP+A Y + AMLW G AQ G+ F L
Sbjct: 127 LIILAPG-PYLSLVLQHLEPDMVLPVAAYGLI-LMAMLWRGLAQGGSAGWGALLFTLSDG 184
Query: 300 VLEAMT---AFRRAGADIIITYYTPQLL 324
VL T A I+ TYY QLL
Sbjct: 185 VLAWDTFAQPLPHARLVIMTTYYAAQLL 212
>gi|71274164 RAB15 effector protein [Homo sapiens]
Length = 236
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 60 RLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEA 104
+LEE + E+ L +IFG+P + PKD RG DS +S + +
Sbjct: 147 KLEEFCNLIGEDCLGLFIIFGMPGK-PKDIRGVVLDSVKSQMVRS 190
>gi|120953264 folliculin interacting protein 1 isoform 2 [Homo
sapiens]
Length = 1138
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 122 CLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEA 181
C C Y SH G EN + + E Q ++ L + CQ+++PSD +
Sbjct: 580 CNCKYCSHPLLGQNVENISQQEREDIQNSSKELLGISDE-CQMISPSDCQE--------- 629
Query: 182 LMAHGLGNRVSVMSYSAKFASCF 204
N V V Y K +CF
Sbjct: 630 ------ENAVDVKQYRDKLRTCF 646
>gi|120953291 folliculin interacting protein 1 isoform 1 [Homo
sapiens]
Length = 1166
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 122 CLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEA 181
C C Y SH G EN + + E Q ++ L + CQ+++PSD +
Sbjct: 608 CNCKYCSHPLLGQNVENISQQEREDIQNSSKELLGISDE-CQMISPSDCQE--------- 657
Query: 182 LMAHGLGNRVSVMSYSAKFASCF 204
N V V Y K +CF
Sbjct: 658 ------ENAVDVKQYRDKLRTCF 674
>gi|106049528 pyruvate carboxylase precursor [Homo sapiens]
Length = 1178
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 242 VREGADMLMVKPGMPYLD------IVREVKDKHPDLPLAV--YHVSGE-FAMLWHGAQAG 292
VR G +L +K L +V ++D+ PDLPL + + SG A + AQAG
Sbjct: 731 VRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAG 790
Query: 293 A--FDLKAAVLEAMTAFRRAGADIIITYYTP 321
A D+ A + MT+ GA + T TP
Sbjct: 791 ADVVDVAADSMSGMTSQPSMGALVACTRGTP 821
>gi|106049295 pyruvate carboxylase precursor [Homo sapiens]
Length = 1178
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 242 VREGADMLMVKPGMPYLD------IVREVKDKHPDLPLAV--YHVSGE-FAMLWHGAQAG 292
VR G +L +K L +V ++D+ PDLPL + + SG A + AQAG
Sbjct: 731 VRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAG 790
Query: 293 A--FDLKAAVLEAMTAFRRAGADIIITYYTP 321
A D+ A + MT+ GA + T TP
Sbjct: 791 ADVVDVAADSMSGMTSQPSMGALVACTRGTP 821
>gi|106049292 pyruvate carboxylase precursor [Homo sapiens]
Length = 1178
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 242 VREGADMLMVKPGMPYLD------IVREVKDKHPDLPLAV--YHVSGE-FAMLWHGAQAG 292
VR G +L +K L +V ++D+ PDLPL + + SG A + AQAG
Sbjct: 731 VRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAG 790
Query: 293 A--FDLKAAVLEAMTAFRRAGADIIITYYTP 321
A D+ A + MT+ GA + T TP
Sbjct: 791 ADVVDVAADSMSGMTSQPSMGALVACTRGTP 821
>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
Length = 1077
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 127 TSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQV----VAPSDMMDGRVEAIKEA 181
+SHG L SE+ E++ Q +A A AY K+G + V S M G + AI +A
Sbjct: 727 SSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSEVMLSPAMQGVILAIAKA 785
>gi|47132537 phosphodiesterase 8A isoform 2 [Homo sapiens]
Length = 783
Score = 28.5 bits (62), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 21 TATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEML--RPLVEEGLRCVLI 78
T T + +SN+I PI + DVP I + + LE RPL+ GL+
Sbjct: 419 TKNTQMVSSNIITPISLDDVPPRIARAMENEEYWDFDIFELEAATHNRPLIYLGLKMFAR 478
Query: 79 FGV 81
FG+
Sbjct: 479 FGI 481
>gi|27734721 phosphodiesterase 8A isoform 1 [Homo sapiens]
Length = 829
Score = 28.5 bits (62), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 21 TATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEML--RPLVEEGLRCVLI 78
T T + +SN+I PI + DVP I + + LE RPL+ GL+
Sbjct: 465 TKNTQMVSSNIITPISLDDVPPRIARAMENEEYWDFDIFELEAATHNRPLIYLGLKMFAR 524
Query: 79 FGV 81
FG+
Sbjct: 525 FGI 527
>gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo sapiens]
Length = 296
Score = 28.5 bits (62), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 102 IEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAY 157
+ +H L P++++A DV CP G+L A R QR EV +A+
Sbjct: 196 VATVHQLSAFQPDVVIAADVLYCPEAIMSLVGVLRRLAACR---EHQRAPEVYVAF 248
>gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens]
Length = 330
Score = 28.5 bits (62), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 102 IEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAY 157
+ +H L P++++A DV CP G+L A R QR EV +A+
Sbjct: 230 VATVHQLSAFQPDVVIAADVLYCPEAIMSLVGVLRRLAACR---EHQRAPEVYVAF 282
>gi|153792298 piwi-like 3 [Homo sapiens]
Length = 882
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 34 PIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDER 90
P+ +T P ++ + G A + L + RP ++ G+ C+L+F V +P D++
Sbjct: 535 PMGITMKPAEM---IEVDGDANSYIDTLRKYTRPTLQMGMSCLLVFKVICILPNDDK 588
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,780,287
Number of Sequences: 37866
Number of extensions: 550317
Number of successful extensions: 1058
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 15
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.