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Search of human proteins with 188528644
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188528644 raftlin family member 2 [Homo sapiens]
(501 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188528644 raftlin family member 2 [Homo sapiens] 1016 0.0
gi|41872577 raft-linking protein [Homo sapiens] 234 2e-61
gi|62122917 filaggrin family member 2 [Homo sapiens] 39 0.011
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 36 0.093
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 33 0.46
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 33 0.46
gi|57864582 hornerin [Homo sapiens] 31 2.3
gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo sa... 30 3.9
gi|14550416 Fc receptor-like 4 precursor [Homo sapiens] 30 5.1
gi|56711286 hypothetical protein LOC340533 [Homo sapiens] 30 6.7
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 30 6.7
>gi|188528644 raftlin family member 2 [Homo sapiens]
Length = 501
Score = 1016 bits (2628), Expect = 0.0
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQASSNPEVIKINSIL 60
MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQASSNPEVIKINSIL
Sbjct: 1 MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQASSNPEVIKINSIL 60
Query: 61 DIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSGQRR 120
DIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSGQRR
Sbjct: 61 DIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSGQRR 120
Query: 121 PRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKFCNGTNHDGDI 180
PRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKFCNGTNHDGDI
Sbjct: 121 PRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKFCNGTNHDGDI 180
Query: 181 ESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSRKGEA 240
ESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSRKGEA
Sbjct: 181 ESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSRKGEA 240
Query: 241 SDNKLYTVFNAFDDDSTSWAYQEGILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLID 300
SDNKLYTVFNAFDDDSTSWAYQEGILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLID
Sbjct: 241 SDNKLYTVFNAFDDDSTSWAYQEGILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLID 300
Query: 301 SFVFWETSKGEHLPKSLEGFFIYEEEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGP 360
SFVFWETSKGEHLPKSLEGFFIYEEEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGP
Sbjct: 301 SFVFWETSKGEHLPKSLEGFFIYEEEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGP 360
Query: 361 LLHTLAEFGWLLTSVLPTPVLRHDSEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKG 420
LLHTLAEFGWLLTSVLPTPVLRHDSEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKG
Sbjct: 361 LLHTLAEFGWLLTSVLPTPVLRHDSEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKG 420
Query: 421 EDKNKATSRSIGLDTTSSQPAESRHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNV 480
EDKNKATSRSIGLDTTSSQPAESRHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNV
Sbjct: 421 EDKNKATSRSIGLDTTSSQPAESRHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNV 480
Query: 481 LRELDDGQFDQEDGVTQVTCM 501
LRELDDGQFDQEDGVTQVTCM
Sbjct: 481 LRELDDGQFDQEDGVTQVTCM 501
>gi|41872577 raft-linking protein [Homo sapiens]
Length = 578
Score = 234 bits (596), Expect = 2e-61
Identities = 159/479 (33%), Positives = 248/479 (51%), Gaps = 41/479 (8%)
Query: 1 MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFT-LQASSNP--EVIKIN 57
MGCGL KLE D+ PG I+STLKRPQVETK + +YEY L+FT L A+ P +++
Sbjct: 1 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA 60
Query: 58 SILDIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSG 117
S+ D+ ++ Y +G+ + A+HP +QP +R+ P +++R +L+ K + ++
Sbjct: 61 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILI--KKTDRSQKTDLH 118
Query: 118 QRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYS---------PS 168
L ++ C E I+KI AA +G+KFVG I Q++S P
Sbjct: 119 NEGYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPV 178
Query: 169 KFCNGT-------NHDGDIESMLHVRHGSDENC-----RSWNEGTLSGQSSESGIEEELH 216
N T N GD S+ + + G+ + C R+ + SG E + ++
Sbjct: 179 STANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPS 238
Query: 217 HESGQYQMEQNGSPTSSKSRKGEASDN------------KLYTVFNAFDDDSTSWAYQEG 264
SG+ + SK+ G S+ +++T+FN Y
Sbjct: 239 SPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPV 298
Query: 265 ILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLIDSFVFWETSKGEHLPKSLEGFFIYE 324
+ + V++ G +S LDA+WLE + ++++G L+++ VF+ + L +G FI+E
Sbjct: 299 TIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNA-VFYLGIVNDSLHGLTDGVFIFE 357
Query: 325 EEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHD 384
S + +G DAIVVEQWTV+EG E++TDY PLL++LA +GW LT VLPTPV++
Sbjct: 358 AV-STEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTT 416
Query: 385 SEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKGEDKNKATSRSIG-LDTTSSQPAE 442
SEG+++TKQIVFLQRP + + K R + E N+ +S G L Q AE
Sbjct: 417 SEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAE 475
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 38.9 bits (89), Expect = 0.011
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 124 VIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQ---HYSPSKFCNGTNH--DG 178
++ E T+ QT D + + + G + G YS S+ +G +H G
Sbjct: 1687 IVPERHGTTHGQTGDTTRHAHYHHGLTTQTGSRTTGRRGSGHSEYSDSEGYSGVSHTHSG 1746
Query: 179 DIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSRKG 238
+HG E+ GT+ GQ+ ++ H SG Q Q GS T+ + G
Sbjct: 1747 HTHGQARSQHGESESIVHERHGTIHGQTGDT----TRHAHSGHGQSTQTGSRTTGRRSSG 1802
Query: 239 --EASDNKLYTVFN 250
E SD++ ++ F+
Sbjct: 1803 HSEYSDSEGHSGFS 1816
Score = 38.9 bits (89), Expect = 0.011
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 131 TSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKFCN-----GTNHDGDIESMLH 185
T+ QT D + + +RG + G +S S H G
Sbjct: 2071 TTHGQTGDTTRHAHSGHGQSTQRGSRTAGRRGSGHSESSDSEVHSGVSHTHSGHTYGQAR 2130
Query: 186 VRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSRK--GEASDN 243
+HG + +GT+ GQ+ ++ H +SG Q Q GS T+ + R E+SD+
Sbjct: 2131 SQHGESGSAIHGRQGTIHGQTGDT----TRHGQSGHGQSTQTGSRTTGRQRSSHSESSDS 2186
Query: 244 KLYT 247
++++
Sbjct: 2187 EVHS 2190
Score = 38.5 bits (88), Expect = 0.014
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 124 VIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSP-------SKFCNGTNH 176
++ E T QT D + + + G + G S +S S F +
Sbjct: 1762 IVHERHGTIHGQTGDTTRHAHSGHGQSTQTGSRTTGRRSSGHSEYSDSEGHSGFSQRPHS 1821
Query: 177 DGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKSR 236
G +HG E+ GT GQ+ ++ H +SG Q Q+GS T+ + R
Sbjct: 1822 RGHTHGQAGSQHGESESIVDERHGTTHGQTGDTSG----HSQSGHGQSTQSGSSTTGRRR 1877
Query: 237 KG--EASDNKLYT 247
G E+SD+++++
Sbjct: 1878 SGHSESSDSEVHS 1890
Score = 32.7 bits (73), Expect = 0.79
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 176 HDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSPTSSKS 235
H G S RHG + +GT GQ+ ++ H G Q Q GS T+ +
Sbjct: 2196 HSGHTHSQAGSRHGQSGSSGHGRQGTTHGQTGDT----TRHAHYGYGQSTQRGSRTTGRR 2251
Query: 236 RKG--EASDNKLYT 247
G E+SD+++++
Sbjct: 2252 GSGHSESSDSEVHS 2265
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 114 APSGQRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKFCN- 172
A S P + E T+ Q D + +RG + G +S S
Sbjct: 1602 AGSQHEEPEFTVHERHGTTHGQIGDTTGHSHSGHGQSTQRGSRTTGRQRSSHSESSDSEV 1661
Query: 173 ----GTNHDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNG 228
H G +HG E+ GT GQ+ ++ HH Q G
Sbjct: 1662 HSGVSHTHTGHTHGQAGSQHGQSESIVPERHGTTHGQTGDTTRHAHYHHG----LTTQTG 1717
Query: 229 SPTSSKSRKG--EASDNKLYT 247
S T+ + G E SD++ Y+
Sbjct: 1718 SRTTGRRGSGHSEYSDSEGYS 1738
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 163 QHYSPSKFCNGTNHDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQY 222
QH S S +G G GSD++ GT SGQSS G + S Q
Sbjct: 1027 QHRSSSGQYSGFGQHGS---------GSDQSSGFGQHGTGSGQSSGFG---QYESRSRQS 1074
Query: 223 QMEQNGSPTSSKSRKGEASDN 243
Q+GS +S S G+ N
Sbjct: 1075 SYGQHGSGSSQSSGYGQHGSN 1095
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 35.8 bits (81), Expect = 0.093
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Query: 105 LKLSPKNSAAPSGQRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFI--S 162
++L+ N A+ GQ R + I E E + ND ++ K+N +F I S
Sbjct: 1917 MELNVGNEASFHGQERTKTGISEEAAIEENKRNDDSEADTAKLNAKEVATEEFNSDISLS 1976
Query: 163 QHYSPSKFCNGTNHDGDIESMLHVRHGSD-ENCRSWNEGTLSGQSSESGIEEELHHESGQ 221
+ +P K N + + + G+D + S E +++E + E E+G
Sbjct: 1977 DNTTPVKL-NAQTEISEQTAAGELDGGNDVSDLHSSEETNTKMKNNEEMMIGEAMAETGH 2035
Query: 222 YQMEQNGSPTSSKSRKGEASDNKLYTVFNAFDDDSTSWAYQEGILSMKVTRKGSVIS 278
+N T+ S+ EA N L + F D+ + +EGI+ T + S
Sbjct: 2036 DGETENEGITTKTSKPDEAETNMLTAEMDNFVCDTVEMSTEEGIIDANKTETNTEYS 2092
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 33.5 bits (75), Expect = 0.46
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 111 NSAAPSGQRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKF 170
N S + P+ ++ L ++ + N AKE + +N ++ + P+K
Sbjct: 489 NPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESE----------EEVGPTKE 538
Query: 171 CNGTNHDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSP 230
+ + + + + D + R + E L E G E+ELH ++E+N S
Sbjct: 539 SEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSE 598
Query: 231 TSSKSRKGEASDNKLYTVFNAFDDDS 256
S G FD+DS
Sbjct: 599 NSEFEDDGSEKVLDEEGSEREFDEDS 624
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 33.5 bits (75), Expect = 0.46
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 111 NSAAPSGQRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYSPSKF 170
N S + P+ ++ L ++ + N AKE + +N ++ + P+K
Sbjct: 489 NPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESE----------EEVGPTKE 538
Query: 171 CNGTNHDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSP 230
+ + + + + D + R + E L E G E+ELH ++E+N S
Sbjct: 539 SEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSE 598
Query: 231 TSSKSRKGEASDNKLYTVFNAFDDDS 256
S G FD+DS
Sbjct: 599 NSEFEDDGSEKVLDEEGSEREFDEDS 624
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.2 bits (69), Expect = 2.3
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 166 SPSKFCNGTNHDGDIESMLHVRHGSDE--NCRSWNEGTLSGQSSESGIEEELHHESGQYQ 223
SPS+ G + G S + +HGS + S G+ SGQSS G E +S Y
Sbjct: 1829 SPSR---GRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYT 1885
Query: 224 MEQNGSPTSSK-----SRKGEAS 241
+GS SS SR G++S
Sbjct: 1886 QHGSGSGHSSSYEQHGSRSGQSS 1908
Score = 31.2 bits (69), Expect = 2.3
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 166 SPSKFCNGTNHDGDIESMLHVRHGSDE--NCRSWNEGTLSGQSSESGIEEELHHESGQYQ 223
SPS+ G + G S + +HGS + S G+ SGQSS G E +S Y
Sbjct: 2299 SPSR---GRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYT 2355
Query: 224 MEQNGSPTSSK-----SRKGEAS 241
+GS SS SR G++S
Sbjct: 2356 QHGSGSGHSSSYEQHGSRSGQSS 2378
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 173 GTNHDGDIESMLHVRHGSDEN--CRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSP 230
G + G S + +HGS C G+ SGQSS E +S Y +GS
Sbjct: 2695 GQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSS 2754
Query: 231 TSS-KSRKGEASDNKL 245
SS R G S L
Sbjct: 2755 QSSGYGRHGAGSGQSL 2770
Score = 29.3 bits (64), Expect = 8.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 172 NGTNHDGDIESMLHVRHGSDE--NCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGS 229
+G G +S + RHGS + S G+ G+SS G E +S Y +GS
Sbjct: 1128 HGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGS 1187
Query: 230 PTSS-----KSRKGEAS 241
SS SR G++S
Sbjct: 1188 GHSSGYGQHGSRSGQSS 1204
Score = 29.3 bits (64), Expect = 8.7
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 173 GTNHDGDIESMLHVRHGSDEN--CRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGSP 230
G + G S + +HGS C G+ SGQSS E +S Y +GS
Sbjct: 1285 GQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSS 1344
Query: 231 TSS 233
SS
Sbjct: 1345 QSS 1347
Score = 29.3 bits (64), Expect = 8.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 172 NGTNHDGDIESMLHVRHGSDE--NCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGS 229
+G G +S + RHGS + S G+ G+SS G E +S Y +GS
Sbjct: 1598 HGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGS 1657
Query: 230 PTSS-----KSRKGEAS 241
SS SR G++S
Sbjct: 1658 GHSSGYGQHGSRSGQSS 1674
Score = 29.3 bits (64), Expect = 8.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 172 NGTNHDGDIESMLHVRHGSDE--NCRSWNEGTLSGQSSESGIEEELHHESGQYQMEQNGS 229
+G G +S + RHGS + S G+ G+SS G E +S Y +GS
Sbjct: 2538 HGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGS 2597
Query: 230 PTSS-----KSRKGEAS 241
SS SR G++S
Sbjct: 2598 GHSSGYGQHGSRSGQSS 2614
>gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo
sapiens]
Length = 417
Score = 30.4 bits (67), Expect = 3.9
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 395 VFLQRPVMWNSAAQTPDKKASRHIKGEDKNKATSRSIGLDTTSSQPAESRHLPEECRLSP 454
V L P+ N ++ D K + + E+KN + S + + +S P +++H E+ +
Sbjct: 182 VSLSAPMTTNGLPESTDSKEANLQQNEEKNHSDSSTSESEVSSVSPLKNKHPDEDAVEAE 241
Query: 455 SREC----WTKEGRLAQHNSFSGFSSSDNVL 481
E + KEG + + S + S +V+
Sbjct: 242 GHEVKRLRFDKEGEVRETASQTTSSEISSVM 272
>gi|14550416 Fc receptor-like 4 precursor [Homo sapiens]
Length = 515
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 218 ESGQYQMEQNGSPTSSKSRKGEASDNK-LYTVFNAFDDDS----TSWAYQEGILSMKVTR 272
ESG Y+ + GSP S+ R +SD+ L ++ F+ D+ +E + ++K T
Sbjct: 79 ESGLYRCQARGSPRSNPVRLLFSSDSLILQAPYSVFEGDTLVLRCHRRRKEKLTAVKYTW 138
Query: 273 KGSVISTLDADW 284
G+++S + W
Sbjct: 139 NGNILSISNKSW 150
>gi|56711286 hypothetical protein LOC340533 [Homo sapiens]
Length = 1516
Score = 29.6 bits (65), Expect = 6.7
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 26/239 (10%)
Query: 254 DDSTSWAYQEGILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLIDSFVFWETSKGEHL 313
+D +Y E +L K + ++++ + DW TF + + L+D E S
Sbjct: 228 EDPAQKSYYEALLLDKCNTEEALLANSNQDWGYFETFISESKIELLDLCSKNELSVNLFS 287
Query: 314 PKSLEGFFIYEEEGSGVPGSSRKGND--AIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWL 371
+ ++ + ++E S G+D ++ + + + KT L+ A+F +
Sbjct: 288 EEDVDNYMFDDDE-------STLGSDVCSLKIRYESFQDNVRDKTTL--LMQEDAQFNF- 337
Query: 372 LTSVLPTPVLRHDSEGNLAT----KQIVFLQRPVMWNSAAQTPDKKASRHIKGEDK--NK 425
SV T R G L Q ++W + DKK + EDK K
Sbjct: 338 FPSVFTTCPKRESKSGALKQSSDFSQFKVPDVSIIWGEEDKNLDKKKGKEEGQEDKGVEK 397
Query: 426 ATSRSIGLDTTSSQPAESRHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNVLREL 484
+ G ++P + E +P K+G LA SG S D+ E+
Sbjct: 398 KDGKDNGEKPALNKPCSGTEV--EQLKNP------KQGHLANSLETSGSFSDDSSFIEI 448
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 29.6 bits (65), Expect = 6.7
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 144 IEKINVAAKRGMKFVGFISQHYSPSKFCNGTNHDGDIESMLHVRHGSDENCRSWNEGTLS 203
+E+++ A+ G++ + QH K G GD +S+ R G DE+ S+ T S
Sbjct: 118 LEELHTQAQEGLRSL----QHQEKQKLNKGGWDHGDTQSIQSSRTGPDEDNISFCSQTTS 173
Query: 204 GQSSESGIEEELHHESGQYQME------QNGSPTSSKS 235
+ S E+ L S Q + + P S KS
Sbjct: 174 YVAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSGKS 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,206,970
Number of Sequences: 37866
Number of extensions: 933366
Number of successful extensions: 1924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1848
Number of HSP's gapped (non-prelim): 78
length of query: 501
length of database: 18,247,518
effective HSP length: 106
effective length of query: 395
effective length of database: 14,233,722
effective search space: 5622320190
effective search space used: 5622320190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.