Search of human proteins with 187169264

Search of human proteins with 187169264

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]          517   e-147
gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]           417   e-117
gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]          160   1e-39
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       32   0.70 
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]                      31   0.92 
gi|42476076 hypothetical protein LOC22878 [Homo sapiens]               30   1.6  
gi|19718759 myoferlin isoform b [Homo sapiens]                         29   4.6  
gi|7305053 myoferlin isoform a [Homo sapiens]                          29   4.6  
gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]      29   4.6  
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]        28   5.9  
gi|110578655 Zwilch [Homo sapiens]                                     28   5.9  
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]             28   7.8  

>gi|187169264 GINS complex subunit 3 isoform a [Homo sapiens]
          Length = 255

 Score =  517 bits (1331), Expect = e-147
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
           MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61  PQGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQGSKLELPLWLAKGLFDNKR 120
           PQGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQGSKLELPLWLAKGLFDNKR
Sbjct: 61  PQGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQGSKLELPLWLAKGLFDNKR 120

Query: 121 RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 180
           RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT
Sbjct: 121 RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 180

Query: 181 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 240
           FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN
Sbjct: 181 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 240

Query: 241 LVQNYKKRKFTDMED 255
           LVQNYKKRKFTDMED
Sbjct: 241 LVQNYKKRKFTDMED 255


>gi|21362088 GINS complex subunit 3 isoform b [Homo sapiens]
          Length = 216

 Score =  417 bits (1073), Expect = e-117
 Identities = 216/255 (84%), Positives = 216/255 (84%), Gaps = 39/255 (15%)

Query: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
           MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1   MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61  PQGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQGSKLELPLWLAKGLFDNKR 120
           PQG                                       SKLELPLWLAKGLFDNKR
Sbjct: 61  PQG---------------------------------------SKLELPLWLAKGLFDNKR 81

Query: 121 RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 180
           RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT
Sbjct: 82  RILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQT 141

Query: 181 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 240
           FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN
Sbjct: 142 FIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQITASN 201

Query: 241 LVQNYKKRKFTDMED 255
           LVQNYKKRKFTDMED
Sbjct: 202 LVQNYKKRKFTDMED 216


>gi|187169266 GINS complex subunit 3 isoform c [Homo sapiens]
          Length = 138

 Score =  160 bits (404), Expect = 1e-39
 Identities = 78/85 (91%), Positives = 81/85 (95%)

Query: 171 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 230
           A+   ++ QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK
Sbjct: 54  AETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEK 113

Query: 231 GQASQITASNLVQNYKKRKFTDMED 255
           GQASQITASNLVQNYKKRKFTDMED
Sbjct: 114 GQASQITASNLVQNYKKRKFTDMED 138



 Score =  126 bits (317), Expect = 2e-29
 Identities = 63/64 (98%), Positives = 63/64 (98%)

Query: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60
          MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV
Sbjct: 1  MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAV 60

Query: 61 PQGF 64
          PQ F
Sbjct: 61 PQTF 64


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 31.6 bits (70), Expect = 0.70
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 161  QLLHFDSPENADISQSLL------QTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGL 214
            Q LH D P +A ++QSLL      Q    +FR+ +      Y +  S L A + +++ G+
Sbjct: 3352 QALHIDGPRSAQVAQSLLKEEASWQQSHHQFRKRLSEEYTFYPDAVSPLQASILQLQHGM 3411


>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
          Length = 384

 Score = 31.2 bits (69), Expect = 0.92
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 62  QGFALLPRLECSGVIWLTAALTSQAPEILPPQPPMWLVLQ 101
           +G  L     CS    +T A  + APEILPPQPP  L LQ
Sbjct: 340 EGLVLQETTFCS----VTQAELNWAPEILPPQPPEQLGLQ 375


>gi|42476076 hypothetical protein LOC22878 [Homo sapiens]
          Length = 1435

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 83   TSQAPEILPPQPPMWLVLQGSKLELPLWL 111
            T   PE++P   P  ++L G+ ++LP+WL
Sbjct: 1008 TGSQPEVIPVPLPDTVLLPGASVQLPMWL 1036


>gi|19718759 myoferlin isoform b [Homo sapiens]
          Length = 2048

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 91   PPQPPMWLVLQGSK---LELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVD 147
            PP PP  +  + +K   L + +W  K +  +++ I   E+  IY +GW      +    D
Sbjct: 1760 PPGPPFNITPRKAKKYYLRVIIWNTKDVILDEKSITGEEMSDIYVKGWIPGNEENKQKTD 1819

Query: 148  LH 149
            +H
Sbjct: 1820 VH 1821


>gi|7305053 myoferlin isoform a [Homo sapiens]
          Length = 2061

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 91   PPQPPMWLVLQGSK---LELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVD 147
            PP PP  +  + +K   L + +W  K +  +++ I   E+  IY +GW      +    D
Sbjct: 1773 PPGPPFNITPRKAKKYYLRVIIWNTKDVILDEKSITGEEMSDIYVKGWIPGNEENKQKTD 1832

Query: 148  LH 149
            +H
Sbjct: 1833 VH 1834


>gi|51477716 mannosidase, alpha, class 2A, member 2 [Homo sapiens]
          Length = 1150

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 15  PEENFLSLDDILMSHEKLPVRT 36
           PE  FL +DD  +SH+ LP RT
Sbjct: 618 PEAPFLQVDDTRLSHDALPERT 639


>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
          Length = 4857

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 132  QEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDS 191
            QE    +  +DPN++  H +     G      +  SP+    +   +Q F+ R +  + S
Sbjct: 2745 QESTAHLLVSDPNLI--HVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSS 2802

Query: 192  SQNAYNEDTSALVARLDEMERGLFQTGQKGLN 223
            +      +    +  +   ERG FQTGQ  L+
Sbjct: 2803 TCPQIFSEFLLKLIHILSTERGAFQTGQGPLD 2834


>gi|110578655 Zwilch [Homo sapiens]
          Length = 591

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 8   VESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGFALL 67
           +  G   P +N L+ +DI+   EK+P+  E     +     E +A ++       G   L
Sbjct: 43  ISKGQPNPLKNILNENDIVFIVEKVPLEKEET-SHIEELQSEETAISDFSTGENVGPLAL 101

Query: 68  PRLECSGVIWL-TAALTSQAPEI-----LPPQPPMWLVLQGSKLELPLWLAKGLFDNKRR 121
           P  +   +I L T A       +     +   PP+W+    S  E   WL   L      
Sbjct: 102 PVGKARQLIGLYTMAHNPNMTHLKINLPVTALPPLWVRCDSSDPEGTCWLGAELITTNNS 161

Query: 122 ILSVELPKIYQEGWRTVFSADPNVVDLHKMGPH 154
           I  + L  +  +  +       N+ +LHK   H
Sbjct: 162 ITGIVLYVVSCKADKNYSVNLENLKNLHKKRHH 194


>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
          Length = 135

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 62  QGFALLPRLECSGVI 76
           +  ALLPRLECSGVI
Sbjct: 102 RSLALLPRLECSGVI 116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,667,933
Number of Sequences: 37866
Number of extensions: 419873
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 14
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.