Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 18152783
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18152783 ribosomal protein L10-like protein [Homo sapiens] 449 e-127
gi|223890243 ribosomal protein L10 [Homo sapiens] 429 e-121
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens] 175 2e-44
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens] 175 2e-44
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap... 175 2e-44
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 126 1e-29
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 126 1e-29
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 126 1e-29
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 120 1e-27
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 120 1e-27
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 120 1e-27
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens] 94 9e-20
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ... 94 9e-20
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ... 94 9e-20
gi|214010212 archain isoform 2 [Homo sapiens] 28 5.8
gi|11863154 archain isoform 1 [Homo sapiens] 28 5.8
gi|26051231 lactamase, beta isoform a [Homo sapiens] 27 10.0
gi|26051233 lactamase, beta isoform b [Homo sapiens] 27 10.0
>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
Length = 214
Score = 449 bits (1156), Expect = e-127
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60
Query: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
Sbjct: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
>gi|223890243 ribosomal protein L10 [Homo sapiens]
Length = 214
Score = 429 bits (1104), Expect = e-121
Identities = 204/214 (95%), Positives = 210/214 (98%)
Query: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPL GHMVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARICANKYMVKSCG+DGFH+RVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
KPQGTVARVHIGQVIMSIRTKLQN+EHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
FEDMVA+K LIPDGCGVKY+P+ GPLDKWR LHS
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 175 bits (444), Expect = 2e-44
Identities = 83/105 (79%), Positives = 92/105 (87%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQN+EHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
KWGFTKFNADEFE +VA+K L PDGCGVK +PSHGPL+KW+ L+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 175 bits (444), Expect = 2e-44
Identities = 83/105 (79%), Positives = 92/105 (87%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQN+EHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
KWGFTKFNADEFE +VA+K L PDGCGVK +PSHGPL+KW+ L+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
sapiens]
Length = 150
Score = 175 bits (444), Expect = 2e-44
Identities = 83/105 (79%), Positives = 92/105 (87%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQN+EHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
KWGFTKFNADEFE +VA+K L PDGCGVK +PSHGPL+KW+ L+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 126 bits (317), Expect = 1e-29
Identities = 63/87 (72%), Positives = 70/87 (80%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQN+EHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAKKCLIPDGCGVKYVP 201
KF+ DEFEDM+A+K LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 126 bits (317), Expect = 1e-29
Identities = 63/87 (72%), Positives = 70/87 (80%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQN+EHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAKKCLIPDGCGVKYVP 201
KF+ DEFEDM+A+K LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 126 bits (317), Expect = 1e-29
Identities = 63/87 (72%), Positives = 70/87 (80%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQN+EHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAKKCLIPDGCGVKYVP 201
KF+ DEFEDM+A+K LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 120 bits (300), Expect = 1e-27
Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQN+EHVIEA RAKFKFPG QKIHISK
Sbjct: 212 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 270
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 271 KWGFTKFNVDE 281
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 120 bits (300), Expect = 1e-27
Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQN+EHVIEA RAKFKFPG QKIHISK
Sbjct: 89 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 147
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 148 KWGFTKFNVDE 158
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 120 bits (300), Expect = 1e-27
Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQN+EHVIEA RAKFKFPG QKIHISK
Sbjct: 89 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 147
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 148 KWGFTKFNVDE 158
>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
Length = 186
Score = 94.0 bits (232), Expect = 9e-20
Identities = 51/70 (72%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQN++ VIE L RAKFK G QKI ISK
Sbjct: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 177 KWCFTKFKVD 186
>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
Length = 180
Score = 94.0 bits (232), Expect = 9e-20
Identities = 51/70 (72%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQN++ VIE L RAKFK G QKI ISK
Sbjct: 114 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 170
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 171 KWCFTKFKVD 180
>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
Length = 186
Score = 94.0 bits (232), Expect = 9e-20
Identities = 51/70 (72%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQN++ VIE L RAKFK G QKI ISK
Sbjct: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 177 KWCFTKFKVD 186
>gi|214010212 archain isoform 2 [Homo sapiens]
Length = 423
Score = 28.1 bits (61), Expect = 5.8
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 27 PDAKIRIFDLGRKKAKVDEF-----PLGGHMVSDEYEQLSSEA---------LEAARICA 72
P + LG K +VD F G ++S + +SEA +E+ +
Sbjct: 131 PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKI 190
Query: 73 NKYMVKSCGRDGFHMRVRLHPFHVIRIN 100
+ + +CGRDG + LH ++RI+
Sbjct: 191 EEKITLTCGRDGGLQNMELHGMIMLRIS 218
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 28.1 bits (61), Expect = 5.8
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 27 PDAKIRIFDLGRKKAKVDEF-----PLGGHMVSDEYEQLSSEA---------LEAARICA 72
P + LG K +VD F G ++S + +SEA +E+ +
Sbjct: 219 PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKI 278
Query: 73 NKYMVKSCGRDGFHMRVRLHPFHVIRIN 100
+ + +CGRDG + LH ++RI+
Sbjct: 279 EEKITLTCGRDGGLQNMELHGMIMLRIS 306
>gi|26051231 lactamase, beta isoform a [Homo sapiens]
Length = 547
Score = 27.3 bits (59), Expect = 10.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 68 ARICANKYMVKSCGRDGFHMRVRLHPF---HVIRINKMLSCAGADRLQTGMRGA 118
AR A + SCGR G H R L P V + L A +L G+RGA
Sbjct: 10 ARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGA 63
>gi|26051233 lactamase, beta isoform b [Homo sapiens]
Length = 373
Score = 27.3 bits (59), Expect = 10.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 68 ARICANKYMVKSCGRDGFHMRVRLHPF---HVIRINKMLSCAGADRLQTGMRGA 118
AR A + SCGR G H R L P V + L A +L G+RGA
Sbjct: 10 ARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGA 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,459
Number of Sequences: 37866
Number of extensions: 347221
Number of successful extensions: 742
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 18
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.