Search of human proteins with 18087813

Search of human proteins with 18087813

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18087813 transmembrane protein 41A [Homo sapiens]
         (264 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18087813 transmembrane protein 41A [Homo sapiens]                  528   e-150
gi|66392190 transmembrane protein 41B [Homo sapiens]                  164   6e-41
gi|223555958 transmembrane protein 64 isoform 1 [Homo sapiens]         31   0.97 
gi|110681719 hypothetical protein LOC23731 [Homo sapiens]              28   8.2  
gi|52421347 olfactory receptor, family 2, subfamily B, member 3 ...    28   8.2  
gi|50897292 olfactory receptor, family 8, subfamily D, member 2 ...    28   8.2  

>gi|18087813 transmembrane protein 41A [Homo sapiens]
          Length = 264

 Score =  528 bits (1361), Expect = e-150
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MRPLLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLRE 60
           MRPLLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLRE
Sbjct: 1   MRPLLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLRE 60

Query: 61  YRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCY 120
           YRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCY
Sbjct: 61  YRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCY 120

Query: 121 LLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNI 180
           LLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNI
Sbjct: 121 LLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNI 180

Query: 181 PIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIK 240
           PIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIK
Sbjct: 181 PIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIK 240

Query: 241 KFSQKHLQLNETSTANHIHSRKDT 264
           KFSQKHLQLNETSTANHIHSRKDT
Sbjct: 241 KFSQKHLQLNETSTANHIHSRKDT 264


>gi|66392190 transmembrane protein 41B [Homo sapiens]
          Length = 291

 Score =  164 bits (416), Expect = 6e-41
 Identities = 78/242 (32%), Positives = 142/242 (58%), Gaps = 6/242 (2%)

Query: 4   LLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRK 63
           LL L+ +F    F ++L+    P+   L   E     ++  P D+ + + L +VL +Y+ 
Sbjct: 54  LLILVSIFLSAAFVMFLVYKNFPQ---LSEEERV---NMKVPRDMDDAKALGKVLSKYKD 107

Query: 64  EHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLS 123
                V + +   Y++ Q FAIPGS FL++L+G L+   L L L C+ + +GA+ CY+LS
Sbjct: 108 TFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLS 167

Query: 124 SIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIV 183
            + G+ +V  Y  +K     ++VE +R  L  +++FLR+ P  PNWF+N+++P++N+P+ 
Sbjct: 168 YLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLK 227

Query: 184 QFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIKKFS 243
            FF    +G+ P +F+ ++ G+ L  LT+     SW+++F L+ +A+++++P    KK  
Sbjct: 228 VFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLK 287

Query: 244 QK 245
           QK
Sbjct: 288 QK 289


>gi|223555958 transmembrane protein 64 isoform 1 [Homo sapiens]
          Length = 380

 Score = 31.2 bits (69), Expect = 0.97
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 75  GAYLYKQGFAIP------GSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSIFGK 128
           G  L+  GF +       G   LNV AG L+G  LG+ L  V   +G      ++ +  K
Sbjct: 159 GVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMMVGVLIGT----FIAHVVCK 214

Query: 129 QLVVSYFPDKVALLQR-----KVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIV 183
           +L+ ++   ++   ++     +V E  + L    L  RL P+ P    N    I ++ + 
Sbjct: 215 RLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVAL-ARLTPI-PFGLQNAVFSITDLSLP 272

Query: 184 QFFFSVLIGLIPYNFICVQTGSILSTLTSLDA 215
            +  +  +GL+P   +    G+ L T+  + A
Sbjct: 273 NYLMASSVGLLPTQLLNSYLGTTLRTMEDVIA 304


>gi|110681719 hypothetical protein LOC23731 [Homo sapiens]
          Length = 879

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 75  GAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLS 123
           G + Y  G A+ G ++   L GA+ GP   +LLC ++ +       L+S
Sbjct: 801 GGHPYLTGLAVAGGAYYLGLEGAIIGP---ILLCILVVASNIYSAMLVS 846


>gi|52421347 olfactory receptor, family 2, subfamily B, member 3
           [Homo sapiens]
          Length = 313

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 185 FFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLA--IAMVALIPGTLIKKF 242
           FFFSVLI LIP   I +  G I   +  + +       F      + +V+L  GT I  +
Sbjct: 200 FFFSVLILLIPVTLILISYGFIAQAVLKIRSAEGRQKAFGTCGSHMIVVSLFYGTAIYMY 259

Query: 243 SQ 244
            Q
Sbjct: 260 LQ 261


>gi|50897292 olfactory receptor, family 8, subfamily D, member 2
           [Homo sapiens]
          Length = 311

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 62  RKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYL 121
           R E Q  +FLLF G Y+      + G  FL  L+  L+ P    L       +    CY 
Sbjct: 20  RPELQLPLFLLFLGIYVVTVVGNL-GMIFLIALSSQLYPPVYYFLSHLSFIDL----CY- 73

Query: 122 LSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFL 160
            SS+   +++V++ P++  +      E    L+FFL+F+
Sbjct: 74  -SSVITPKMLVNFVPEENII---SFLECITQLYFFLIFV 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,121,838
Number of Sequences: 37866
Number of extensions: 367964
Number of successful extensions: 1191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 6
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.