Search of human proteins with 17402882

Search of human proteins with 17402882

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17402882 deoxyribonuclease II beta isoform 2 [Homo sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17402882 deoxyribonuclease II beta isoform 2 [Homo sapiens]        326   5e-90
gi|194473657 deoxyribonuclease II beta isoform 1 precursor [Homo...   326   5e-90
gi|4503349 deoxyribonuclease II, lysosomal precursor [Homo sapiens]   108   2e-24
gi|5174421 copine 6 [Homo sapiens]                                     29   1.8  
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]           27   5.2  
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ...    27   5.2  
gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo ...    27   5.2  
gi|4758436 gastric inhibitory polypeptide preproprotein [Homo sa...    27   6.8  
gi|71143112 ring finger and WD repeat domain 3 [Homo sapiens]          27   8.9  

>gi|17402882 deoxyribonuclease II beta isoform 2 [Homo sapiens]
          Length = 153

 Score =  326 bits (835), Expect = 5e-90
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 60
           MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW
Sbjct: 1   MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 60

Query: 61  QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 120
           QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS
Sbjct: 61  QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 120

Query: 121 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 153
           PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK
Sbjct: 121 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 153


>gi|194473657 deoxyribonuclease II beta isoform 1 precursor [Homo
           sapiens]
          Length = 361

 Score =  326 bits (835), Expect = 5e-90
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 60
           MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW
Sbjct: 209 MPQLCTRASSSEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETW 268

Query: 61  QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 120
           QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS
Sbjct: 269 QRKRQELPSNCSLPYHVYNIKAIKLSRHSYFSSYQDHAKWCISQKGTKNRWTCIGDLNRS 328

Query: 121 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 153
           PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK
Sbjct: 329 PHQAFRSGGFICTQNWQIYQAFQGLVLYYESCK 361


>gi|4503349 deoxyribonuclease II, lysosomal precursor [Homo sapiens]
          Length = 360

 Score =  108 bits (269), Expect = 2e-24
 Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 5/144 (3%)

Query: 11  SEIPGRLLTTLQSAQGQKFLHFAKSDSFLDDIFAAWMAQRLKTHLLTETWQRKRQELPSN 70
           S+ P     TL S  G  F  FAK   F DD+++ W+A  L T+L  + W +    LPSN
Sbjct: 207 SQEPWNSSITLTSQAGAVFQSFAKFSKFGDDLYSGWLAAALGTNLQVQFWHKTVGILPSN 266

Query: 71  CSLPYHVYNIKAIKLSRHS--YFSSYQDHAKWCISQKGTKNRWTCIGDLNRSPHQAFRSG 128
           CS  + V N+  I     +   F+S +DH+KWC+S KG    WTC+GD+NR+  +  R G
Sbjct: 267 CSDIWQVLNVNQIAFPGPAGPSFNSTEDHSKWCVSPKGP---WTCVGDMNRNQGEEQRGG 323

Query: 129 GFICTQNWQIYQAFQGLVLYYESC 152
           G +C Q   +++AFQ LV  Y+ C
Sbjct: 324 GTLCAQLPALWKAFQPLVKNYQPC 347


>gi|5174421 copine 6 [Homo sapiens]
          Length = 557

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 24/119 (20%)

Query: 32  FAKSDSFLDDIFA--------AWMAQRLKTHLLTETWQRKRQELPSNCSLPYHVYNIKAI 83
           F+KSD F++             W  + +K +L   +W+  R  L S CS   H    + +
Sbjct: 169 FSKSDPFMEIYKTNEDQSDQLVWRTEVVKNNL-NPSWEPFRLSLHSLCSCDVH----RPL 223

Query: 84  KLSRHSYFSSYQDH------AKWCISQKGTKN-----RWTCIGDLNRSPHQAFRSGGFI 131
           K   + Y SS +        + +   Q+GT N     +W CI    R   + ++S G +
Sbjct: 224 KFLVYDYDSSGKHDFIGEFTSTFQEMQEGTANPGQEMQWDCINPKYRDKKKNYKSSGTV 282


>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
          Length = 651

 Score = 27.3 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 53  THLLTETWQRKRQELPS-NCSLPY--HVYNI 80
           TH +T TW + + ELP+   S+ Y  H YN+
Sbjct: 212 THQVTVTWLKNKHELPNPQTSVQYSGHTYNV 242


>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
           sapiens]
          Length = 651

 Score = 27.3 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 53  THLLTETWQRKRQELPS-NCSLPY--HVYNI 80
           TH +T TW + + ELP+   S+ Y  H YN+
Sbjct: 212 THQVTVTWLKNKHELPNPQTSVQYSGHTYNV 242


>gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo
           sapiens]
          Length = 532

 Score = 27.3 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 53  THLLTETWQRKRQELPS-NCSLPY--HVYNI 80
           TH +T TW + + ELP+   S+ Y  H YN+
Sbjct: 212 THQVTVTWLKNKHELPNPQTSVQYSGHTYNV 242


>gi|4758436 gastric inhibitory polypeptide preproprotein [Homo
           sapiens]
          Length = 153

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 95  QDHAKWCISQKGTKNRW 111
           QD   W ++QKG KN W
Sbjct: 71  QDFVNWLLAQKGKKNDW 87


>gi|71143112 ring finger and WD repeat domain 3 [Homo sapiens]
          Length = 774

 Score = 26.6 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 49  QRLKTHLLTETWQRKRQELPS-NCSLPYHVYNIKAIKLSR 87
           +R+K+ LL E   RK+ EL S  C L   V   K  +L R
Sbjct: 356 ERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQR 395


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.132    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,073,302
Number of Sequences: 37866
Number of extensions: 240679
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 9
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.