Search of human proteins with 17136148

Search of human proteins with 17136148

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17136148 ATPase, H+ transporting, lysosomal accessory
protein 1 precursor [Homo sapiens]
         (470 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17136148 ATPase, H+ transporting, lysosomal accessory protein...   937   0.0  
gi|63003910 ATPase, H+ transporting, lysosomal accessory protein...   101   1e-21
gi|7705429 proteasome maturation protein [Homo sapiens]                31   2.1  
gi|4557563 excision repair cross-complementing rodent repair def...    30   4.7  
gi|164663775 mitochondrial methionyl-tRNA formyltransferase prec...    30   4.7  
gi|55741675 hypothetical protein LOC22889 [Homo sapiens]               30   4.7  
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    29   8.1  
gi|4504957 lysosomal-associated membrane protein 2 isoform A pre...    29   8.1  

>gi|17136148 ATPase, H+ transporting, lysosomal accessory protein 1
           precursor [Homo sapiens]
          Length = 470

 Score =  937 bits (2422), Expect = 0.0
 Identities = 470/470 (100%), Positives = 470/470 (100%)

Query: 1   MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA 60
           MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA
Sbjct: 1   MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA 60

Query: 61  ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL 120
           ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL
Sbjct: 61  ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL 120

Query: 121 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR 180
           ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR
Sbjct: 121 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR 180

Query: 181 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL 240
           LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL
Sbjct: 181 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL 240

Query: 241 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS 300
           GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS
Sbjct: 241 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS 300

Query: 301 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ 360
           FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ
Sbjct: 301 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ 360

Query: 361 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS 420
           VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS
Sbjct: 361 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS 420

Query: 421 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV 470
           FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV
Sbjct: 421 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV 470


>gi|63003910 ATPase, H+ transporting, lysosomal accessory protein
           1-like [Homo sapiens]
          Length = 224

 Score =  101 bits (252), Expect = 1e-21
 Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 320 TVTFKFILANRLYPVSARHWFTMERLEVHSNGSV-AYFNASQVTGPSIYSFHCEYVSSLS 378
           ++  +FIL N    +S + WF++ R+E+ SN S+ A FN + V  PS YS+ C+ V SL 
Sbjct: 40  SLAIRFILTN-YNKLSIQSWFSLRRVEIISNNSIQAVFNPTGVYAPSGYSYRCQRVGSLQ 98

Query: 379 KKGSLLVARTQP---SPWQMMLQDFQIQAFNVMGEQFSYASDCASFFSPGIWMGLLTSLF 435
           +  +LL+        S W++   DFQIQ F + G +F+ A DCAS FSP   +GL  SL 
Sbjct: 99  QDQALLLPSDTDDGSSLWEVTFIDFQIQGFAIKGGRFTKAQDCASSFSPAFLIGLAMSLI 158

Query: 436 MLFIFTYGLHMILSLKTMDR 455
           +L +  Y LHM++ L+ +D+
Sbjct: 159 LLLVLAYALHMLIYLRYLDQ 178


>gi|7705429 proteasome maturation protein [Homo sapiens]
          Length = 141

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 149 QEKLGASPLHVDLATLRELKLNASLPALLLI-RLPYTASSGLMAPREVLTGNDEVIG 204
           Q+K+  S L         LKL     A+  + RLP+ +SS L    +VL GNDE IG
Sbjct: 59  QDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSL--DVLRGNDETIG 113


>gi|4557563 excision repair cross-complementing rodent repair
           deficiency, complementation group 3 [Homo sapiens]
          Length = 782

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 309 LSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQVTGPSIYS 368
           L+ T  R     V   F++  +LY  +   W     +E+ +NG +A    ++V  P    
Sbjct: 466 LTATLVREDDKIVDLNFLIGPKLYEAN---W-----MELQNNGYIAKVQCAEVWCPMSPE 517

Query: 369 FHCEYVSSLSKKGSLL 384
           F+ EYV+  +KK  LL
Sbjct: 518 FYREYVAIKTKKRILL 533


>gi|164663775 mitochondrial methionyl-tRNA formyltransferase
           precursor [Homo sapiens]
          Length = 389

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 83  ELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVS 142
           E  P  VL F  D+ + E   A      NK++     LE     +PS   LP   +   S
Sbjct: 44  EKPPWRVLFFGTDQFAREALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQS 103

Query: 143 TLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIRLPY 183
            L  Y    +G+    V +       LN +    L+++ PY
Sbjct: 104 QLPVYEWPDVGSGEYDVGVVASFGRLLNEA----LILKFPY 140


>gi|55741675 hypothetical protein LOC22889 [Homo sapiens]
          Length = 614

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 159 VDLATLRELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYT 218
           +D A     K+NA L A   ++    AS  L AP + LT N      V++ ++  DVP T
Sbjct: 56  LDAAAAVAAKINAMLMAKGKLKPTQNASEKLQAPGKGLTSNKSKDDLVVAEVEINDVPLT 115


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 128 PSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIRLPYTASS 187
           PS+  L  +D  A  T T       G  P      +     L+      LLIR P  AS 
Sbjct: 197 PSTASLTKMDSTASITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASP 256

Query: 188 GLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGLGRQLLQK 247
             M  R  LT  D       S  ++   P TA+ T   PSR +  +      L R L + 
Sbjct: 257 TGMLSRTSLTKMD----STASITRTPSRPSTASPTGT-PSRASLSMTPSTASLMRMLPRA 311

Query: 248 QPVSPVIHPPVSYNDTAPRI 267
            P   +    ++  D+   I
Sbjct: 312 SPTGMLSRTSLTKMDSTASI 331


>gi|4504957 lysosomal-associated membrane protein 2 isoform A
           precursor [Homo sapiens]
          Length = 410

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 352 SVAYFNASQVTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQ 411
           S+A  N S    P   S+ C    ++S  G+          +Q+   D ++Q FNV   +
Sbjct: 312 SIANNNLSYWDAPLGSSYMCNKEQTVSVSGA----------FQINTFDLRVQPFNVTQGK 361

Query: 412 FSYASDCA----SFFSPGIWMGLLTSLFMLFIFTY 442
           +S A DC+    +F  P      L  + +L +  Y
Sbjct: 362 YSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAY 396


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,799,080
Number of Sequences: 37866
Number of extensions: 705279
Number of successful extensions: 1727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 8
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.