Guide to the Human Genome
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Name: FAP Sequence: fasta or formatted (760aa) NCBI GI: 16933540
Description:

fibroblast activation protein, alpha subunit

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         46           1
 C cysteine            1.6         12           1
 D aspartate           5.0         38           2
 E glutamate           5.7         43           3
 F phenylalanine       4.5         34           2
 G glycine             5.7         43           2
 H histidine           1.8         14           1
 I isoleucine          7.0         53           2
 K lysine              5.7         43           2
 L leucine             7.4         56           2
 M methionine          1.7         13           1
 N asparagine          5.0         38           2
 P proline             4.5         34           2
 Q glutamine           3.9         30           1
 R arginine            4.2         32           2
 S serine              7.8         59           2
 T threonine           5.4         41           2
 V valine              6.7         51           2
 W tryptophan          2.6         20           2
 Y tyrosine            7.9         60           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibroblast activation protein, alpha subunit 
DPP4                  0.527   dipeptidylpeptidase IV 
DPP10                 0.281   dipeptidyl peptidase 10 isoform short 
DPP10                 0.281   dipeptidyl peptidase 10 isoform long 
DPP6                  0.263   dipeptidyl-peptidase 6 isoform 3 
DPP6                  0.263   dipeptidyl-peptidase 6 isoform 2 
DPP6                  0.263   dipeptidyl-peptidase 6 isoform 1 
DPP8                  0.078   dipeptidyl peptidase 8 isoform 3 
DPP8                  0.078   dipeptidyl peptidase 8 isoform 1 
DPP9                  0.072   dipeptidylpeptidase 9 
DPP8                  0.039   dipeptidyl peptidase 8 isoform 4 
DPP8                  0.026   dipeptidyl peptidase 8 isoform 2 
APEH                  0.018   N-acylaminoacyl-peptide hydrolase 
CES7                  0.007   carboxylesterase 7 isoform 1 
CES7                  0.007   carboxylesterase 7 isoform 2 
PAFAH2                0.005   platelet-activating factor acetylhydrolase 2 
ESD                   0.004   esterase D/formylglutathione hydrolase 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.003   odz, odd Oz/ten-m homolog 1 isoform 1 
KLRK1                 0.003   NKG2-D type II integral membrane protein 
PRPF3                 0.003   PRP3 pre-mRNA processing factor 3 homolog 
DMXL2                 0.003   Dmx-like 2 
IPO9                  0.003   importin 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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