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Search of human proteins with 169209444
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209444 PREDICTED: similar to coiled-coil domain
containing 25 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209444 PREDICTED: similar to coiled-coil domain containing... 357 3e-99
gi|169210521 PREDICTED: similar to coiled-coil domain containing... 289 1e-78
gi|169210082 PREDICTED: similar to coiled-coil domain containing... 289 1e-78
gi|108936950 coiled-coil domain containing 25 [Homo sapiens] 244 3e-65
gi|218505670 epithelial cell adhesion molecule precursor [Homo s... 29 1.8
gi|115527120 nebulin [Homo sapiens] 28 4.0
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 28 4.0
gi|7662160 hypothetical protein LOC9813 [Homo sapiens] 28 4.0
gi|4507531 toll-like receptor 3 [Homo sapiens] 28 5.2
gi|134142345 ATP-binding cassette, sub-family C, member 1 isofor... 28 5.2
gi|134142342 ATP-binding cassette, sub-family C, member 1 isofor... 28 5.2
gi|134142340 ATP-binding cassette, sub-family C, member 1 isofor... 28 5.2
gi|134142335 ATP-binding cassette, sub-family C, member 1 isofor... 28 5.2
gi|134142337 ATP-binding cassette, sub-family C, member 1 isofor... 28 5.2
gi|84781739 leucine-rich repeats and transmembrane domains 2 [Ho... 28 5.2
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 27 6.7
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 27 6.7
gi|33946313 ninein isoform 4 [Homo sapiens] 27 8.8
gi|33946321 ninein isoform 5 [Homo sapiens] 27 8.8
gi|24432067 FRA10AC1 protein [Homo sapiens] 27 8.8
gi|23397670 zinc finger protein 280B [Homo sapiens] 27 8.8
>gi|169209444 PREDICTED: similar to coiled-coil domain containing 25
[Homo sapiens]
Length = 173
Score = 357 bits (916), Expect = 3e-99
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI
Sbjct: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
Query: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT
Sbjct: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
Query: 121 MEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRLLASVFTFHRVVWVC 173
MEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRLLASVFTFHRVVWVC
Sbjct: 121 MEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRLLASVFTFHRVVWVC 173
>gi|169210521 PREDICTED: similar to coiled-coil domain containing 25
[Homo sapiens]
Length = 170
Score = 289 bits (739), Expect = 1e-78
Identities = 142/153 (92%), Positives = 144/153 (94%)
Query: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI
Sbjct: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
Query: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT
Sbjct: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
Query: 121 MEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGK 153
MEKKVNEILNRLEKTKVEP A++ F K
Sbjct: 121 MEKKVNEILNRLEKTKVEPEKTAYEFWKREFQK 153
>gi|169210082 PREDICTED: similar to coiled-coil domain containing 25
[Homo sapiens]
Length = 170
Score = 289 bits (739), Expect = 1e-78
Identities = 142/153 (92%), Positives = 144/153 (94%)
Query: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI
Sbjct: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
Query: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT
Sbjct: 61 EDIPKEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVT 120
Query: 121 MEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGK 153
MEKKVNEILNRLEKTKVEP A++ F K
Sbjct: 121 MEKKVNEILNRLEKTKVEPEKTAYEFWKREFQK 153
>gi|108936950 coiled-coil domain containing 25 [Homo sapiens]
Length = 208
Score = 244 bits (623), Expect = 3e-65
Identities = 125/149 (83%), Positives = 131/149 (87%), Gaps = 3/149 (2%)
Query: 1 MVFYFTSSSVNSSACAIYMGKDKYENEDLMKHGWPEYIWFRADRLSLAHVYLQLHKGENI 60
MVFYFTSSSVNSSA IYMGKDKYENEDL+KHGWPE IWF D+LS AHVYL+LHKGENI
Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENI 60
Query: 61 EDIPKEVLTDCAHLVKANSTQGCK-NNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIV 119
EDIPKEVL DCAHLVKANS QGCK NNVNVV TP SNLKKTAD+DV QIGFHRQKDVKIV
Sbjct: 61 EDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIV 120
Query: 120 TMEKKVNEILNRLEKTKVE--PGTMAHKK 146
T+EKKVNEILNRLEKTKVE P A K+
Sbjct: 121 TVEKKVNEILNRLEKTKVERFPDLAAEKE 149
>gi|218505670 epithelial cell adhesion molecule precursor [Homo
sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 84 KNNVNVVNTPRSNLKKTA-DVDVRQIGFHRQKDVKIVTM--EKKVNEILNRLEKTKVEPG 140
+NNV ++ +++ +KT DVD+ + ++ +KDVK ++ KK++ +N E+ ++PG
Sbjct: 187 ENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNG-EQLDLDPG 245
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 89 VVNTPRSNLKKTADVDVRQI----GFHRQKD-----------VKIVTMEKKVNEILNRLE 133
VV+ PR L KTA + QI + + KD ++ + K++++IL +LE
Sbjct: 5420 VVDEPRHLLAKTAGDQISQIKYRKNYEKSKDKFTSIVDTPEHLRTTKVNKQISDILYKLE 5479
Query: 134 KTKVEP 139
K +P
Sbjct: 5480 YNKAKP 5485
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 65 KEVLTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVTMEKK 124
KEVL K + + ++ V ++L + ++ I + ++K + + EKK
Sbjct: 759 KEVLESSIAHEKRKAKEALESEKRKVQDLENHLTQQKEISESNIAYEKRKAKEAMEKEKK 818
Query: 125 -VNEILNRLEKTKVE 138
V ++ NRL K K E
Sbjct: 819 KVQDLENRLTKQKEE 833
>gi|7662160 hypothetical protein LOC9813 [Homo sapiens]
Length = 495
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 102 DVDVRQIGFHRQKDVKIVTMEKKVNEILNR--LEKTKVEPGTMAHKKQHMSFGKESSR 157
+V+ +G+ RQ D+K+ M + V+ + R L ++ V + KK ++SF R
Sbjct: 276 EVNSALVGYQRQNDLKLEGMNETVSNLTQRVNLIESDVVAMSKVEKKANLSFSMMGDR 333
>gi|4507531 toll-like receptor 3 [Homo sapiens]
Length = 904
Score = 27.7 bits (60), Expect = 5.2
Identities = 16/70 (22%), Positives = 28/70 (40%)
Query: 68 LTDCAHLVKANSTQGCKNNVNVVNTPRSNLKKTADVDVRQIGFHRQKDVKIVTMEKKVNE 127
+ DC+HL N+ V+N + L++ + + DV T+ K E
Sbjct: 34 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 93
Query: 128 ILNRLEKTKV 137
+ +L KV
Sbjct: 94 LCQKLPMLKV 103
>gi|134142345 ATP-binding cassette, sub-family C, member 1 isoform 3
[Homo sapiens]
Length = 1475
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 107 QIGFHRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRL-----LA 161
Q+ + KD +I K +NEILN ++ K+ +A K + ++ +E + L L+
Sbjct: 491 QVAHMKSKDNRI----KLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLS 546
Query: 162 SVFTFHRVVWVC 173
+V TF WVC
Sbjct: 547 AVGTF---TWVC 555
>gi|134142342 ATP-binding cassette, sub-family C, member 1 isoform 4
[Homo sapiens]
Length = 1416
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 107 QIGFHRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRL-----LA 161
Q+ + KD +I K +NEILN ++ K+ +A K + ++ +E + L L+
Sbjct: 491 QVAHMKSKDNRI----KLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLS 546
Query: 162 SVFTFHRVVWVC 173
+V TF WVC
Sbjct: 547 AVGTF---TWVC 555
>gi|134142340 ATP-binding cassette, sub-family C, member 1 isoform 2
[Homo sapiens]
Length = 1472
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 107 QIGFHRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRL-----LA 161
Q+ + KD +I K +NEILN ++ K+ +A K + ++ +E + L L+
Sbjct: 491 QVAHMKSKDNRI----KLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLS 546
Query: 162 SVFTFHRVVWVC 173
+V TF WVC
Sbjct: 547 AVGTF---TWVC 555
>gi|134142335 ATP-binding cassette, sub-family C, member 1 isoform 5
[Homo sapiens]
Length = 1466
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 107 QIGFHRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRL-----LA 161
Q+ + KD +I K +NEILN ++ K+ +A K + ++ +E + L L+
Sbjct: 491 QVAHMKSKDNRI----KLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLS 546
Query: 162 SVFTFHRVVWVC 173
+V TF WVC
Sbjct: 547 AVGTF---TWVC 555
>gi|134142337 ATP-binding cassette, sub-family C, member 1 isoform 1
[Homo sapiens]
Length = 1531
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 107 QIGFHRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRRL-----LA 161
Q+ + KD +I K +NEILN ++ K+ +A K + ++ +E + L L+
Sbjct: 491 QVAHMKSKDNRI----KLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLS 546
Query: 162 SVFTFHRVVWVC 173
+V TF WVC
Sbjct: 547 AVGTF---TWVC 555
>gi|84781739 leucine-rich repeats and transmembrane domains 2 [Homo
sapiens]
Length = 370
Score = 27.7 bits (60), Expect = 5.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 31 KHGWPEYIWFRADRLS-LAHVYLQLHKGENIEDIPKEVLTDCAHLVKANSTQG 82
KH W E+ +R RL LA + +G+++ +P E+ C+ L NS+ G
Sbjct: 210 KH-WMEWFSYRGGRLDQLACTLPKELRGKDMRMVPMEMFNYCSQLEDENSSAG 261
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 27.3 bits (59), Expect = 6.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 91 NTPRSNLKKTADVDVRQIGFHRQKDVKIVTMEKKVNEILNRLEKTK 136
N ++ + +D RQKD KI E+K I+ LEK +
Sbjct: 1171 NLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDR 1216
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 27.3 bits (59), Expect = 6.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 91 NTPRSNLKKTADVDVRQIGFHRQKDVKIVTMEKKVNEILNRLEKTK 136
N ++ + +D RQKD KI E+K I+ LEK +
Sbjct: 1171 NLKEQIIELQSKLDSELSALERQKDEKITQQEEKYEAIIQNLEKDR 1216
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 72 AHLVKANSTQGCKNNVNVVNTPRSNLKKTADV-DVRQIGFHRQKDVKIVTMEKKVNEILN 130
A + + + +N + NTP+ N ++ V + R I + + K+ +++ + E +N
Sbjct: 2010 AERINQHLQEELENRTSETNTPQGNQEQLVTVMEERMI----EVEQKLKLVKRLLQEKVN 2065
Query: 131 RLEKTKVEPGTMAHKKQHMSF 151
+L++ PG + H SF
Sbjct: 2066 QLKEQVSLPGHLCSPTSHSSF 2086
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 26.9 bits (58), Expect = 8.8
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 72 AHLVKANSTQGCKNNVNVVNTPRSNLKKTADV-DVRQIGFHRQKDVKIVTMEKKVNEILN 130
A + + + +N + NTP+ N ++ V + R I + + K+ +++ + E +N
Sbjct: 2004 AERINQHLQEELENRTSETNTPQGNQEQLVTVMEERMI----EVEQKLKLVKRLLQEKVN 2059
Query: 131 RLEKTKVEPGTMAHKKQHMSF 151
+L++ PG + H SF
Sbjct: 2060 QLKEQVSLPGHLCSPTSHSSF 2080
>gi|24432067 FRA10AC1 protein [Homo sapiens]
Length = 315
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 111 HRQKDVKIVTMEKKVNEILNRLEKTKVEPGTMAHKKQHMSFGKESSRR 158
HR+K++K KK R +KTK + +HKK +S +E+S++
Sbjct: 222 HRRKEIK----SKK------RKDKTKKDCEESSHKKSRLSSAEEASKK 259
>gi|23397670 zinc finger protein 280B [Homo sapiens]
Length = 543
Score = 26.9 bits (58), Expect = 8.8
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 93 PRSNLKKTADVDVRQIGF------HRQKDVKI----VTMEKK--VNEILNRLEKTKVEPG 140
P+ N+++T VD H +D ++ VT K V+ ILNR V PG
Sbjct: 13 PQKNIQETKQVDDEDAELIFVGVEHVNEDAELIFVGVTSNSKPVVSNILNR-----VTPG 67
Query: 141 TMAHKKQHMSFGKESSRRL 159
+ + +K++ K+++R+L
Sbjct: 68 SWSRRKKYDHLRKDTARKL 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,050,885
Number of Sequences: 37866
Number of extensions: 235334
Number of successful extensions: 689
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 21
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.