Search of human proteins with 169209032

Search of human proteins with 169209032

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169209032 PREDICTED: hypothetical protein [Homo sapiens]
         (85 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169209032 PREDICTED: hypothetical protein [Homo sapiens]           178   7e-46
gi|239750884 PREDICTED: hypothetical protein [Homo sapiens]           177   2e-45
gi|89038491 PREDICTED: hypothetical protein [Homo sapiens]            177   2e-45
gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]   124   2e-29
gi|222352143 TBC1 domain family, member 2 [Homo sapiens]               49   9e-07
gi|122937247 unc-13 homolog A [Homo sapiens]                           30   0.54 
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c...    26   7.7  
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c...    26   7.7  
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    26   7.7  
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [...    26   7.7  

>gi|169209032 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 85

 Score =  178 bits (452), Expect = 7e-46
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAI 60
          MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAI
Sbjct: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAI 60

Query: 61 REDFLHERDTSPDKGELVSDEEEDT 85
          REDFLHERDTSPDKGELVSDEEEDT
Sbjct: 61 REDFLHERDTSPDKGELVSDEEEDT 85


>gi|239750884 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 85

 Score =  177 bits (448), Expect = 2e-45
 Identities = 84/85 (98%), Positives = 85/85 (100%)

Query: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAI 60
          MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRN+RAYHLEKVRLELTELEAI
Sbjct: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNRRAYHLEKVRLELTELEAI 60

Query: 61 REDFLHERDTSPDKGELVSDEEEDT 85
          REDFLHERDTSPDKGELVSDEEEDT
Sbjct: 61 REDFLHERDTSPDKGELVSDEEEDT 85


>gi|89038491 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 85

 Score =  177 bits (448), Expect = 2e-45
 Identities = 84/85 (98%), Positives = 85/85 (100%)

Query: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAI 60
          MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRN+RAYHLEKVRLELTELEAI
Sbjct: 1  MGTGRKSFGAFLFHHSFSWGWKLISISFGDLNPFPVRQIRNRRAYHLEKVRLELTELEAI 60

Query: 61 REDFLHERDTSPDKGELVSDEEEDT 85
          REDFLHERDTSPDKGELVSDEEEDT
Sbjct: 61 REDFLHERDTSPDKGELVSDEEEDT 85


>gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]
          Length = 963

 Score =  124 bits (311), Expect = 2e-29
 Identities = 61/64 (95%), Positives = 63/64 (98%)

Query: 22  KLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAIREDFLHERDTSPDKGELVSDE 81
           KLISISFGDLNPFP+RQIRN+RAYHLEKVRLELTELEAIREDFL ERDTSPDKGELVSDE
Sbjct: 900 KLISISFGDLNPFPLRQIRNRRAYHLEKVRLELTELEAIREDFLRERDTSPDKGELVSDE 959

Query: 82  EEDT 85
           EEDT
Sbjct: 960 EEDT 963


>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
          Length = 917

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 13  FHHSFSWGWKLISISFGDLNPFPVRQIRNQRAYHLEKVRLELTELEAIREDFLHER 68
           F  + S   KL++I+F D+NPF ++Q+R  R  H E++  EL ELE ++ ++L  R
Sbjct: 841 FTKTISNSRKLMNIAFNDMNPFRMKQLRQLRMVHRERLEAELRELEQLKAEYLERR 896


>gi|122937247 unc-13 homolog A [Homo sapiens]
          Length = 1791

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 44  AYHLEKVRLELTE--LEAIREDFLHERDTSPDKGELVSDEEE 83
           +YH +  R +  E  LE   EDFL E +   D+ EL  +EEE
Sbjct: 397 SYHKDSPRWDQDEEELEEDLEDFLEEEELPEDEEELEEEEEE 438


>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
            component n-recognin 5 isoform 2 [Homo sapiens]
          Length = 2277

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 47   LEKVRL-ELTELEAIREDFLHERDTSPDKGELVSDEEEDT 85
            LE+ R  EL EL    ED  HE D   ++   ++D+++D+
Sbjct: 1451 LERKRTRELLELGIDNEDSEHENDDDTNQSATLNDKDDDS 1490


>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
            component n-recognin 5 isoform 1 [Homo sapiens]
          Length = 2796

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 47   LEKVRL-ELTELEAIREDFLHERDTSPDKGELVSDEEEDT 85
            LE+ R  EL EL    ED  HE D   ++   ++D+++D+
Sbjct: 1970 LERKRTRELLELGIDNEDSEHENDDDTNQSATLNDKDDDS 2009


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
           sapiens]
          Length = 1870

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 47  LEKVRLELTELEAIREDFLHERDTSPDKGELVSDEEEDT 85
           LEK+  EL ++   +E  LH+  ++ D+ +L+  + E T
Sbjct: 925 LEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLEST 963


>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
            sapiens]
          Length = 2799

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 47   LEKVRL-ELTELEAIREDFLHERDTSPDKGELVSDEEEDT 85
            LE+ R  EL EL    ED  HE D   ++   ++D+++D+
Sbjct: 1972 LERKRTRELLELGIDNEDSEHENDDDTNQSATLNDKDDDS 2011


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,421,533
Number of Sequences: 37866
Number of extensions: 130434
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 10
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.