Guide to the Human Genome
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Name: LOC646938 Sequence: fasta or formatted (85aa) NCBI GI: 169209032
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {85aa} PREDICTED: hypothetical protein
alt prot {85aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          3           1
 C cysteine            0.0          0           0
 D aspartate           7.1          6           1
 E glutamate          11.8         10           3
 F phenylalanine       8.2          7           1
 G glycine             7.1          6           1
 H histidine           4.7          4           2
 I isoleucine          4.7          4           1
 K lysine              4.7          4           1
 L leucine            10.6          9           1
 M methionine          1.2          1           1
 N asparagine          2.4          2           1
 P proline             3.5          3           1
 Q glutamine           2.4          2           1
 R arginine            8.2          7           1
 S serine              8.2          7           1
 T threonine           4.7          4           1
 V valine              3.5          3           1
 W tryptophan          2.4          2           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC646938             0.993   PREDICTED: hypothetical protein 
LOC646938             0.993   PREDICTED: hypothetical protein 
TBC1D2B               0.647   TBC1 domain family, member 2B isoform a 
TBC1D2                0.157   TBC1 domain family, member 2 
UNC13A                0.033   unc-13 homolog A 
LOC730429             0.007   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.007   PREDICTED: similar to ubiquitin protein ligase E3 c...
CCDC88A               0.007   coiled-coil domain containing 88A isoform 1 
UBR5                  0.007   ubiquitin protein ligase E3 component n-recognin 5 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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