BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] (78 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43 gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43 gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43 gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 164 2e-41 gi|83699414 beta-defensin 130 [Homo sapiens] 164 2e-41 gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 155 9e-39 gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 155 9e-39 gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 155 9e-39 gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 74 3e-14 gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 72 1e-13 gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 70 4e-13 gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.24 gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.24 gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 31 0.24 gi|109134351 zinc finger and BTB domain containing 44 [Homo sapi... 27 4.6 gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 26 6.0 gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 26 7.9 >gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] Length = 78 Score = 168 bits (426), Expect = 8e-43 Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 Query: 61 RWWILEPYPTPVPKGKSP 78 RWWILEPYPTPVPKGKSP Sbjct: 61 RWWILEPYPTPVPKGKSP 78 >gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] Length = 78 Score = 168 bits (426), Expect = 8e-43 Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 Query: 61 RWWILEPYPTPVPKGKSP 78 RWWILEPYPTPVPKGKSP Sbjct: 61 RWWILEPYPTPVPKGKSP 78 >gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] Length = 78 Score = 168 bits (426), Expect = 8e-43 Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60 Query: 61 RWWILEPYPTPVPKGKSP 78 RWWILEPYPTPVPKGKSP Sbjct: 61 RWWILEPYPTPVPKGKSP 78 >gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] Length = 79 Score = 164 bits (414), Expect = 2e-41 Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60 Query: 60 RRWWILEPYPTPVPKGKSP 78 RRWWILEPYPTPVPKGKSP Sbjct: 61 RRWWILEPYPTPVPKGKSP 79 >gi|83699414 beta-defensin 130 [Homo sapiens] Length = 79 Score = 164 bits (414), Expect = 2e-41 Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60 Query: 60 RRWWILEPYPTPVPKGKSP 78 RRWWILEPYPTPVPKGKSP Sbjct: 61 RRWWILEPYPTPVPKGKSP 79 >gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] Length = 128 Score = 155 bits (391), Expect = 9e-39 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%) Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109 Query: 60 RRWWILEPYPTPVPKGKSP 78 RRWWILEPYPTPVPKGKSP Sbjct: 110 RRWWILEPYPTPVPKGKSP 128 >gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo sapiens] Length = 128 Score = 155 bits (391), Expect = 9e-39 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%) Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109 Query: 60 RRWWILEPYPTPVPKGKSP 78 RRWWILEPYPTPVPKGKSP Sbjct: 110 RRWWILEPYPTPVPKGKSP 128 >gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo sapiens] Length = 128 Score = 155 bits (391), Expect = 9e-39 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%) Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109 Query: 60 RRWWILEPYPTPVPKGKSP 78 RRWWILEPYPTPVPKGKSP Sbjct: 110 RRWWILEPYPTPVPKGKSP 128 >gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo sapiens] Length = 87 Score = 73.6 bits (179), Expect = 3e-14 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C K C Sbjct: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60 Query: 60 RRWWILEPYPTPV 72 R WWIL P PTP+ Sbjct: 61 RAWWILMPIPTPL 73 >gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo sapiens] Length = 87 Score = 72.0 bits (175), Expect = 1e-13 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C K C Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60 Query: 60 RRWWILEPYPTPV 72 R WWIL P PTP+ Sbjct: 61 RAWWILMPIPTPL 73 >gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo sapiens] Length = 192 Score = 70.1 bits (170), Expect = 4e-13 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59 ++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C K C Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123 Query: 60 RRWWILEPYPTPV 72 R WWIL P PTP+ Sbjct: 124 RAWWILMPIPTPL 136 >gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 30.8 bits (68), Expect = 0.24 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55 MK+H + VL F+ I + C ++G CR + C + IG C + Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54 >gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 30.8 bits (68), Expect = 0.24 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55 MK+H + VL F+ I + C ++G CR + C + IG C + Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54 >gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] Length = 61 Score = 30.8 bits (68), Expect = 0.24 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55 MK+H + VL F+ I + C ++G CR + C + IG C + Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54 >gi|109134351 zinc finger and BTB domain containing 44 [Homo sapiens] Length = 453 Score = 26.6 bits (57), Expect = 4.6 Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 43 CSTLDDTIGICNEGKKCRRWWILEPYPTPVPKG 75 CS ++ TI +C E ++ R+ +I+ +PV G Sbjct: 167 CSVVERTIPVCRESRRKRKSYIVMSPESPVKCG 199 >gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo sapiens] Length = 316 Score = 26.2 bits (56), Expect = 6.0 Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 59 CRRWWILEPYPTPVPKG 75 CR W+L P P P P G Sbjct: 229 CRSRWVLAPPPPPAPPG 245 >gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif, 2 isoform 1 preproprotein [Homo sapiens] Length = 1211 Score = 25.8 bits (55), Expect = 7.9 Identities = 10/17 (58%), Positives = 11/17 (64%) Query: 39 RDKLCSTLDDTIGICNE 55 R LC T DD+ GIC E Sbjct: 998 RPVLCRTADDSFGICQE 1014 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.143 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,878,425 Number of Sequences: 37866 Number of extensions: 171417 Number of successful extensions: 332 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 17 length of query: 78 length of database: 18,247,518 effective HSP length: 50 effective length of query: 28 effective length of database: 16,354,218 effective search space: 457918104 effective search space used: 457918104 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.