Guide to the Human Genome
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Search of human proteins with 169202991

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
         (78 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens]   168   8e-43
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens]   168   8e-43
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens]   168   8e-43
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens]   164   2e-41
gi|83699414 beta-defensin 130 [Homo sapiens]                          164   2e-41
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]   155   9e-39
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ...   155   9e-39
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ...   155   9e-39
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ...    74   3e-14
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ...    72   1e-13
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ...    70   4e-13
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]              31   0.24 
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]              31   0.24 
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]               31   0.24 
gi|109134351 zinc finger and BTB domain containing 44 [Homo sapi...    27   4.6  
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ...    26   6.0  
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo...    26   7.9  

>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
          sapiens]
          Length = 78

 Score =  168 bits (426), Expect = 8e-43
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
          MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60

Query: 61 RWWILEPYPTPVPKGKSP 78
          RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78


>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
          sapiens]
          Length = 78

 Score =  168 bits (426), Expect = 8e-43
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
          MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60

Query: 61 RWWILEPYPTPVPKGKSP 78
          RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78


>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
          sapiens]
          Length = 78

 Score =  168 bits (426), Expect = 8e-43
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
          MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60

Query: 61 RWWILEPYPTPVPKGKSP 78
          RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78


>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
          sapiens]
          Length = 79

 Score =  164 bits (414), Expect = 2e-41
 Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
          MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60

Query: 60 RRWWILEPYPTPVPKGKSP 78
          RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79


>gi|83699414 beta-defensin 130 [Homo sapiens]
          Length = 79

 Score =  164 bits (414), Expect = 2e-41
 Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
          MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60

Query: 60 RRWWILEPYPTPVPKGKSP 78
          RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79


>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
          Length = 128

 Score =  155 bits (391), Expect = 9e-39
 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)

Query: 2   KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
           KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50  KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109

Query: 60  RRWWILEPYPTPVPKGKSP 78
           RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128


>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
           sapiens]
          Length = 128

 Score =  155 bits (391), Expect = 9e-39
 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)

Query: 2   KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
           KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50  KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109

Query: 60  RRWWILEPYPTPVPKGKSP 78
           RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128


>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
           sapiens]
          Length = 128

 Score =  155 bits (391), Expect = 9e-39
 Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)

Query: 2   KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
           KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50  KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109

Query: 60  RRWWILEPYPTPVPKGKSP 78
           RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128


>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
          sapiens]
          Length = 87

 Score = 73.6 bits (179), Expect = 3e-14
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
          M+LH L+ +LL  + L P  K G+ P +  C+ L GVCR  +C  ++D IG C    K C
Sbjct: 1  MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60

Query: 60 RRWWILEPYPTPV 72
          R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73


>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
          sapiens]
          Length = 87

 Score = 72.0 bits (175), Expect = 1e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
          M+LH L+ +LLLF  L+   + G+ P +  C+ L GVCR  +C+ ++D IG C    K C
Sbjct: 1  MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60

Query: 60 RRWWILEPYPTPV 72
          R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73


>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
           sapiens]
          Length = 192

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1   MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
           ++LH L+ +LLLF  L+   +  + P +  C++L GVCR  +C  ++D IG C    K C
Sbjct: 64  VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123

Query: 60  RRWWILEPYPTPV 72
           R WWIL P PTP+
Sbjct: 124 RAWWILMPIPTPL 136


>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
          MK+H  + VL  F+  I       +     C  ++G CR + C   +  IG C +
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54


>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
          MK+H  + VL  F+  I       +     C  ++G CR + C   +  IG C +
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54


>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 1  MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
          MK+H  + VL  F+  I       +     C  ++G CR + C   +  IG C +
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54


>gi|109134351 zinc finger and BTB domain containing 44 [Homo
           sapiens]
          Length = 453

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 43  CSTLDDTIGICNEGKKCRRWWILEPYPTPVPKG 75
           CS ++ TI +C E ++ R+ +I+    +PV  G
Sbjct: 167 CSVVERTIPVCRESRRKRKSYIVMSPESPVKCG 199


>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
           sapiens]
          Length = 316

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 59  CRRWWILEPYPTPVPKG 75
           CR  W+L P P P P G
Sbjct: 229 CRSRWVLAPPPPPAPPG 245


>gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif,
            2 isoform 1 preproprotein [Homo sapiens]
          Length = 1211

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 39   RDKLCSTLDDTIGICNE 55
            R  LC T DD+ GIC E
Sbjct: 998  RPVLCRTADDSFGICQE 1014


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.143    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,425
Number of Sequences: 37866
Number of extensions: 171417
Number of successful extensions: 332
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 17
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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