BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens] (210 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens] 434 e-122 gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens] 434 e-122 gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens] 190 7e-49 gi|190684675 X-ray repair cross complementing protein 1 [Homo sa... 82 3e-16 gi|54607051 glucocerebrosidase precursor [Homo sapiens] 29 3.3 gi|54607049 glucocerebrosidase precursor [Homo sapiens] 29 3.3 gi|54607047 glucocerebrosidase precursor [Homo sapiens] 29 3.3 gi|54607045 glucocerebrosidase precursor [Homo sapiens] 29 3.3 gi|54607043 glucocerebrosidase precursor [Homo sapiens] 29 3.3 gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens] 29 3.3 gi|194353964 coiled-coil domain containing 157 [Homo sapiens] 28 7.4 gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 27 9.6 gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 27 9.6 gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 27 9.6 gi|239750466 PREDICTED: hypothetical protein [Homo sapiens] 27 9.6 gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo ... 27 9.6 gi|116734676 GREB1 protein isoform c [Homo sapiens] 27 9.6 gi|23397644 GREB1 protein isoform b [Homo sapiens] 27 9.6 gi|23397642 GREB1 protein isoform a [Homo sapiens] 27 9.6 >gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens] Length = 210 Score = 434 bits (1117), Expect = e-122 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS Sbjct: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60 Query: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL Sbjct: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120 Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180 Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210 >gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens] Length = 210 Score = 434 bits (1117), Expect = e-122 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS Sbjct: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60 Query: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL Sbjct: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120 Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180 Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210 >gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens] Length = 187 Score = 190 bits (483), Expect = 7e-49 Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 116 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF Sbjct: 71 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 130 Query: 117 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 145 ITLLPATTLMSLTDSKQGKNRSGVRMFKD Sbjct: 131 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 159 >gi|190684675 X-ray repair cross complementing protein 1 [Homo sapiens] Length = 633 Score = 82.4 bits (202), Expect = 3e-16 Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 11/167 (6%) Query: 45 AKDPKYPVENLLNPDSPRRPWLGCPQDKSGQ--LKVELQLERAVPTGYIDVGNCGCAFLQ 102 ++D + ENLL D+ R+ W K+G+ + V LQLE+ +D+GN G AF++ Sbjct: 14 SQDSTHCAENLLKADTYRK-WRAA---KAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVE 69 Query: 103 IDVGHSSWPL-DRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLR 161 + VG S+ ++ + LL ++ MS ++S+ G N + VRMF + A+ + WDR++ Sbjct: 70 VLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVK 129 Query: 162 LTCSRPFTRHQSFGLAFLRVCSSLDSLDDSVVGPSALLSSVLNKVGE 208 + CS+P+++ FGL+F+R S D D PS ++ + K+G+ Sbjct: 130 IVCSQPYSKDSPFGLSFVRFHSPPDK--DEAEAPSQKVT--VTKLGQ 172 >gi|54607051 glucocerebrosidase precursor [Homo sapiens] Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162 LLP + LTD + K G+ + +DFLAPA L + RL Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369 >gi|54607049 glucocerebrosidase precursor [Homo sapiens] Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162 LLP + LTD + K G+ + +DFLAPA L + RL Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369 >gi|54607047 glucocerebrosidase precursor [Homo sapiens] Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162 LLP + LTD + K G+ + +DFLAPA L + RL Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369 >gi|54607045 glucocerebrosidase precursor [Homo sapiens] Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162 LLP + LTD + K G+ + +DFLAPA L + RL Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369 >gi|54607043 glucocerebrosidase precursor [Homo sapiens] Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162 LLP + LTD + K G+ + +DFLAPA L + RL Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369 >gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens] Length = 444 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%) Query: 41 RGQKAKDPKYPVENLLNPDSPRRP------WLGCPQDK 72 RG DP + V++LL P SP P W+ P DK Sbjct: 366 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK 403 >gi|194353964 coiled-coil domain containing 157 [Homo sapiens] Length = 752 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Query: 37 KSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQ 70 K +++G+ A+ P+Y L+ P S P LG PQ Sbjct: 152 KPTTKGEPARSPEYLTTKLIKPSS---PVLGLPQ 182 >gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo sapiens] Length = 530 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89 ++K Q K PK E D PR+ P K G+ +VE + + TG Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268 >gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo sapiens] Length = 333 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89 ++K Q K PK E D PR+ P K G+ +VE + + TG Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268 >gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo sapiens] Length = 530 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89 ++K Q K PK E D PR+ P K G+ +VE + + TG Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268 >gi|239750466 PREDICTED: hypothetical protein [Homo sapiens] Length = 351 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 26 PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74 P N FLC S + + K P +LL P +PW G P G Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262 >gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo sapiens] Length = 351 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 26 PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74 P N FLC S + + K P +LL P +PW G P G Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262 >gi|116734676 GREB1 protein isoform c [Homo sapiens] Length = 409 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115 +P+SP P GCPQ + K E VP VG G A + V S P+ P Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371 >gi|23397644 GREB1 protein isoform b [Homo sapiens] Length = 457 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115 +P+SP P GCPQ + K E VP VG G A + V S P+ P Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371 >gi|23397642 GREB1 protein isoform a [Homo sapiens] Length = 1949 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115 +P+SP P GCPQ + K E VP VG G A + V S P+ P Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,525,475 Number of Sequences: 37866 Number of extensions: 366911 Number of successful extensions: 768 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 758 Number of HSP's gapped (non-prelim): 19 length of query: 210 length of database: 18,247,518 effective HSP length: 98 effective length of query: 112 effective length of database: 14,536,650 effective search space: 1628104800 effective search space used: 1628104800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.