Guide to the Human Genome
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Search of human proteins with 169202280

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]
         (210 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens]          434   e-122
gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]          434   e-122
gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]          190   7e-49
gi|190684675 X-ray repair cross complementing protein 1 [Homo sa...    82   3e-16
gi|54607051 glucocerebrosidase precursor [Homo sapiens]                29   3.3  
gi|54607049 glucocerebrosidase precursor [Homo sapiens]                29   3.3  
gi|54607047 glucocerebrosidase precursor [Homo sapiens]                29   3.3  
gi|54607045 glucocerebrosidase precursor [Homo sapiens]                29   3.3  
gi|54607043 glucocerebrosidase precursor [Homo sapiens]                29   3.3  
gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]          29   3.3  
gi|194353964 coiled-coil domain containing 157 [Homo sapiens]          28   7.4  
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...    27   9.6  
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...    27   9.6  
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ...    27   9.6  
gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]            27   9.6  
gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo ...    27   9.6  
gi|116734676 GREB1 protein isoform c [Homo sapiens]                    27   9.6  
gi|23397644 GREB1 protein isoform b [Homo sapiens]                     27   9.6  
gi|23397642 GREB1 protein isoform a [Homo sapiens]                     27   9.6  

>gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 210

 Score =  434 bits (1117), Expect = e-122
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
           MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS
Sbjct: 1   MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60

Query: 61  PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
           PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL
Sbjct: 61  PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120

Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
           PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR
Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180

Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
           VCSSLDSLDDSVVGPSALLSSVLNKVGEMF
Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210


>gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 210

 Score =  434 bits (1117), Expect = e-122
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
           MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS
Sbjct: 1   MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60

Query: 61  PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
           PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL
Sbjct: 61  PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120

Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
           PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR
Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180

Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
           VCSSLDSLDDSVVGPSALLSSVLNKVGEMF
Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210


>gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 187

 Score =  190 bits (483), Expect = 7e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 116
           NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF
Sbjct: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 130

Query: 117 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 145
           ITLLPATTLMSLTDSKQGKNRSGVRMFKD
Sbjct: 131 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 159


>gi|190684675 X-ray repair cross complementing protein 1 [Homo
           sapiens]
          Length = 633

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 11/167 (6%)

Query: 45  AKDPKYPVENLLNPDSPRRPWLGCPQDKSGQ--LKVELQLERAVPTGYIDVGNCGCAFLQ 102
           ++D  +  ENLL  D+ R+ W      K+G+  + V LQLE+      +D+GN G AF++
Sbjct: 14  SQDSTHCAENLLKADTYRK-WRAA---KAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVE 69

Query: 103 IDVGHSSWPL-DRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLR 161
           + VG S+    ++ +  LL  ++ MS ++S+ G N + VRMF     +  A+ + WDR++
Sbjct: 70  VLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVK 129

Query: 162 LTCSRPFTRHQSFGLAFLRVCSSLDSLDDSVVGPSALLSSVLNKVGE 208
           + CS+P+++   FGL+F+R  S  D   D    PS  ++  + K+G+
Sbjct: 130 IVCSQPYSKDSPFGLSFVRFHSPPDK--DEAEAPSQKVT--VTKLGQ 172


>gi|54607051 glucocerebrosidase precursor [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
           LLP    + LTD +  K   G+ +   +DFLAPA   L +  RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369


>gi|54607049 glucocerebrosidase precursor [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
           LLP    + LTD +  K   G+ +   +DFLAPA   L +  RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369


>gi|54607047 glucocerebrosidase precursor [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
           LLP    + LTD +  K   G+ +   +DFLAPA   L +  RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369


>gi|54607045 glucocerebrosidase precursor [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
           LLP    + LTD +  K   G+ +   +DFLAPA   L +  RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369


>gi|54607043 glucocerebrosidase precursor [Homo sapiens]
          Length = 536

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
           LLP    + LTD +  K   G+ +   +DFLAPA   L +  RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369


>gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]
          Length = 444

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 41  RGQKAKDPKYPVENLLNPDSPRRP------WLGCPQDK 72
           RG    DP + V++LL P SP  P      W+  P DK
Sbjct: 366 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK 403


>gi|194353964 coiled-coil domain containing 157 [Homo sapiens]
          Length = 752

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 37  KSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQ 70
           K +++G+ A+ P+Y    L+ P S   P LG PQ
Sbjct: 152 KPTTKGEPARSPEYLTTKLIKPSS---PVLGLPQ 182


>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
           sapiens]
          Length = 530

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 35  RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
           ++K     Q  K PK   E     D PR+     P  K G+ +VE + +    TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268


>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
           sapiens]
          Length = 333

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 35  RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
           ++K     Q  K PK   E     D PR+     P  K G+ +VE + +    TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268


>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
           sapiens]
          Length = 530

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 35  RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
           ++K     Q  K PK   E     D PR+     P  K G+ +VE + +    TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268


>gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 351

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 26  PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74
           P N FLC     S  +  + K    P  +LL P    +PW G P    G
Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262


>gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo
           sapiens]
          Length = 351

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 26  PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74
           P N FLC     S  +  + K    P  +LL P    +PW G P    G
Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262


>gi|116734676 GREB1 protein isoform c [Homo sapiens]
          Length = 409

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


>gi|23397644 GREB1 protein isoform b [Homo sapiens]
          Length = 457

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


>gi|23397642 GREB1 protein isoform a [Homo sapiens]
          Length = 1949

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,525,475
Number of Sequences: 37866
Number of extensions: 366911
Number of successful extensions: 768
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 19
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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