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Search of human proteins with 169202280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens] 434 e-122
gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens] 434 e-122
gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens] 190 7e-49
gi|190684675 X-ray repair cross complementing protein 1 [Homo sa... 82 3e-16
gi|54607051 glucocerebrosidase precursor [Homo sapiens] 29 3.3
gi|54607049 glucocerebrosidase precursor [Homo sapiens] 29 3.3
gi|54607047 glucocerebrosidase precursor [Homo sapiens] 29 3.3
gi|54607045 glucocerebrosidase precursor [Homo sapiens] 29 3.3
gi|54607043 glucocerebrosidase precursor [Homo sapiens] 29 3.3
gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens] 29 3.3
gi|194353964 coiled-coil domain containing 157 [Homo sapiens] 28 7.4
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 27 9.6
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 27 9.6
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 27 9.6
gi|239750466 PREDICTED: hypothetical protein [Homo sapiens] 27 9.6
gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo ... 27 9.6
gi|116734676 GREB1 protein isoform c [Homo sapiens] 27 9.6
gi|23397644 GREB1 protein isoform b [Homo sapiens] 27 9.6
gi|23397642 GREB1 protein isoform a [Homo sapiens] 27 9.6
>gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens]
Length = 210
Score = 434 bits (1117), Expect = e-122
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS
Sbjct: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
Query: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL
Sbjct: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR
Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
VCSSLDSLDDSVVGPSALLSSVLNKVGEMF
Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
>gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]
Length = 210
Score = 434 bits (1117), Expect = e-122
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS
Sbjct: 1 MYFPGCSTCHLASVGLIFKNSSFLKPQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDS 60
Query: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL
Sbjct: 61 PRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLL 120
Query: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR
Sbjct: 121 PATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLR 180
Query: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
VCSSLDSLDDSVVGPSALLSSVLNKVGEMF
Sbjct: 181 VCSSLDSLDDSVVGPSALLSSVLNKVGEMF 210
>gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]
Length = 187
Score = 190 bits (483), Expect = 7e-49
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 116
NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF
Sbjct: 71 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 130
Query: 117 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 145
ITLLPATTLMSLTDSKQGKNRSGVRMFKD
Sbjct: 131 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 159
>gi|190684675 X-ray repair cross complementing protein 1 [Homo
sapiens]
Length = 633
Score = 82.4 bits (202), Expect = 3e-16
Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 11/167 (6%)
Query: 45 AKDPKYPVENLLNPDSPRRPWLGCPQDKSGQ--LKVELQLERAVPTGYIDVGNCGCAFLQ 102
++D + ENLL D+ R+ W K+G+ + V LQLE+ +D+GN G AF++
Sbjct: 14 SQDSTHCAENLLKADTYRK-WRAA---KAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVE 69
Query: 103 IDVGHSSWPL-DRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLR 161
+ VG S+ ++ + LL ++ MS ++S+ G N + VRMF + A+ + WDR++
Sbjct: 70 VLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVK 129
Query: 162 LTCSRPFTRHQSFGLAFLRVCSSLDSLDDSVVGPSALLSSVLNKVGE 208
+ CS+P+++ FGL+F+R S D D PS ++ + K+G+
Sbjct: 130 IVCSQPYSKDSPFGLSFVRFHSPPDK--DEAEAPSQKVT--VTKLGQ 172
>gi|54607051 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
LLP + LTD + K G+ + +DFLAPA L + RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369
>gi|54607049 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
LLP + LTD + K G+ + +DFLAPA L + RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369
>gi|54607047 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
LLP + LTD + K G+ + +DFLAPA L + RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369
>gi|54607045 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
LLP + LTD + K G+ + +DFLAPA L + RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369
>gi|54607043 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 119 LLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRL 162
LLP + LTD + K G+ + +DFLAPA L + RL
Sbjct: 326 LLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRL 369
>gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 3.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 41 RGQKAKDPKYPVENLLNPDSPRRP------WLGCPQDK 72
RG DP + V++LL P SP P W+ P DK
Sbjct: 366 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK 403
>gi|194353964 coiled-coil domain containing 157 [Homo sapiens]
Length = 752
Score = 27.7 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 37 KSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQ 70
K +++G+ A+ P+Y L+ P S P LG PQ
Sbjct: 152 KPTTKGEPARSPEYLTTKLIKPSS---PVLGLPQ 182
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
++K Q K PK E D PR+ P K G+ +VE + + TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
++K Q K PK E D PR+ P K G+ +VE + + TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 35 RRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTG 89
++K Q K PK E D PR+ P K G+ +VE + + TG
Sbjct: 218 KKKGQEEKQPKKQPKKDEEGQKEEDKPRKE----PDKKEGKKEVESKRKNLAKTG 268
>gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]
Length = 351
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 26 PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74
P N FLC S + + K P +LL P +PW G P G
Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262
>gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo
sapiens]
Length = 351
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 26 PQNAFLCYGRRKSSSRGQKAKDPKYPVENLLNPDSPRRPWLGCPQDKSG 74
P N FLC S + + K P +LL P +PW G P G
Sbjct: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPPG--HKPWPGPPSPLPG 262
>gi|116734676 GREB1 protein isoform c [Homo sapiens]
Length = 409
Score = 27.3 bits (59), Expect = 9.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
+P+SP P GCPQ + K E VP VG G A + V S P+ P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371
>gi|23397644 GREB1 protein isoform b [Homo sapiens]
Length = 457
Score = 27.3 bits (59), Expect = 9.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
+P+SP P GCPQ + K E VP VG G A + V S P+ P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 27.3 bits (59), Expect = 9.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 57 NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 115
+P+SP P GCPQ + K E VP VG G A + V S P+ P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,525,475
Number of Sequences: 37866
Number of extensions: 366911
Number of successful extensions: 768
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 19
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.