Guide to the Human Genome
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Name: LOC729284 Sequence: fasta or formatted (90aa) NCBI GI: 169172778
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0          9           1
 C cysteine            1.1          1           1
 D aspartate           3.3          3           1
 E glutamate           6.7          6           1
 F phenylalanine       4.4          4           1
 G glycine             7.8          7           1
 H histidine           2.2          2           1
 I isoleucine          2.2          2           1
 K lysine              3.3          3           1
 L leucine             6.7          6           1
 M methionine          3.3          3           1
 N asparagine          4.4          4           1
 P proline             6.7          6           1
 Q glutamine           1.1          1           1
 R arginine            6.7          6           1
 S serine             10.0          9           1
 T threonine           5.6          5           2
 V valine             10.0          9           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729278             1.000   PREDICTED: hypothetical protein 
LOC729270             1.000   PREDICTED: hypothetical protein 
LOC645489             0.987   PREDICTED: hypothetical protein 
LOC729459             0.987   PREDICTED: hypothetical protein 
LOC729456             0.987   PREDICTED: hypothetical protein 
LOC100132221          0.987   PREDICTED: hypothetical protein 
LOC729394             0.987   PREDICTED: hypothetical protein 
LOC729387             0.987   PREDICTED: hypothetical protein 
LOC729383             0.987   PREDICTED: hypothetical protein 
LOC729379             0.987   PREDICTED: hypothetical protein 
LOC100132048          0.987   PREDICTED: hypothetical protein 
LOC100132485          0.987   PREDICTED: hypothetical protein 
LOC729339             0.987   PREDICTED: hypothetical protein 
LOC645489             0.987   PREDICTED: hypothetical protein 
LOC729372             0.981   PREDICTED: hypothetical protein 
LOC100132106          0.981   PREDICTED: hypothetical protein 
LOC100132648          0.981   PREDICTED: hypothetical protein 
LOC729273             0.981   PREDICTED: hypothetical protein 
LOC729261             0.981   PREDICTED: hypothetical protein 
LOC100133099          0.981   PREDICTED: hypothetical protein 
LOC729462             0.975   PREDICTED: hypothetical protein 
LOC729346             0.975   PREDICTED: hypothetical protein 
LOC100289701          0.956   PREDICTED: hypothetical protein XP_002347331 
LOC100287458          0.956   PREDICTED: hypothetical protein XP_002343193 
LOC100293970          0.937   PREDICTED: hypothetical protein 
LOC100289814          0.893   PREDICTED: hypothetical protein XP_002348290 
LOC100292800          0.887   PREDICTED: hypothetical protein 
LOC100289516          0.862   PREDICTED: hypothetical protein XP_002342874 
LOC100287352          0.843   PREDICTED: hypothetical protein XP_002342861 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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