Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289516 Sequence: fasta or formatted (93aa) NCBI GI: 239743497
Description:

PREDICTED: hypothetical protein XP_002342874

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7          9           1
 C cysteine            1.1          1           1
 D aspartate           1.1          1           1
 E glutamate           7.5          7           1
 F phenylalanine       4.3          4           1
 G glycine             8.6          8           1
 H histidine           3.2          3           1
 I isoleucine          2.2          2           1
 K lysine              2.2          2           1
 L leucine             5.4          5           1
 M methionine          2.2          2           1
 N asparagine          4.3          4           1
 P proline             8.6          8           1
 Q glutamine           2.2          2           1
 R arginine            8.6          8           2
 S serine              9.7          9           1
 T threonine           5.4          5           2
 V valine              9.7          9           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342874 
LOC100287352          0.832   PREDICTED: hypothetical protein XP_002342861 
LOC645489             0.826   PREDICTED: hypothetical protein 
LOC729459             0.826   PREDICTED: hypothetical protein 
LOC729456             0.826   PREDICTED: hypothetical protein 
LOC100132221          0.826   PREDICTED: hypothetical protein 
LOC729394             0.826   PREDICTED: hypothetical protein 
LOC729387             0.826   PREDICTED: hypothetical protein 
LOC729383             0.826   PREDICTED: hypothetical protein 
LOC729379             0.826   PREDICTED: hypothetical protein 
LOC100132048          0.826   PREDICTED: hypothetical protein 
LOC100132485          0.826   PREDICTED: hypothetical protein 
LOC729339             0.826   PREDICTED: hypothetical protein 
LOC645489             0.826   PREDICTED: hypothetical protein 
LOC100289701          0.820   PREDICTED: hypothetical protein XP_002347331 
LOC100287458          0.820   PREDICTED: hypothetical protein XP_002343193 
LOC729284             0.820   PREDICTED: hypothetical protein 
LOC729278             0.820   PREDICTED: hypothetical protein 
LOC729270             0.820   PREDICTED: hypothetical protein 
LOC100133099          0.814   PREDICTED: hypothetical protein 
LOC729462             0.808   PREDICTED: hypothetical protein 
LOC729346             0.808   PREDICTED: hypothetical protein 
LOC100132106          0.808   PREDICTED: hypothetical protein 
LOC100132648          0.808   PREDICTED: hypothetical protein 
LOC100293970          0.808   PREDICTED: hypothetical protein 
LOC729372             0.802   PREDICTED: hypothetical protein 
LOC729273             0.802   PREDICTED: hypothetical protein 
LOC729261             0.802   PREDICTED: hypothetical protein 
LOC100292800          0.790   PREDICTED: hypothetical protein 
LOC100289814          0.760   PREDICTED: hypothetical protein XP_002348290 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press