Search of human proteins with 169167981

Search of human proteins with 169167981

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169167981 PREDICTED: hypothetical protein [Homo sapiens]
         (263 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169167981 PREDICTED: hypothetical protein [Homo sapiens]           544   e-155
gi|169168219 PREDICTED: hypothetical protein [Homo sapiens]           264   5e-71
gi|169167696 PREDICTED: hypothetical protein [Homo sapiens]           264   5e-71
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]       40   0.002
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]       29   3.7  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    28   8.2  
gi|38788274 bromodomain PHD finger transcription factor isoform ...    28   8.2  
gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]                  28   8.2  
gi|62460633 RNA-binding motif protein 16 [Homo sapiens]                28   8.2  

>gi|169167981 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score =  544 bits (1401), Expect = e-155
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MQVVWVIQVVQVMQVMQVMQVVQVMQVVQLQASWQRSTLAPEVAMKRVGITETPLEMSQS 60
           MQVVWVIQVVQVMQVMQVMQVVQVMQVVQLQASWQRSTLAPEVAMKRVGITETPLEMSQS
Sbjct: 1   MQVVWVIQVVQVMQVMQVMQVVQVMQVVQLQASWQRSTLAPEVAMKRVGITETPLEMSQS 60

Query: 61  FGTSSRGTQDQQVPSICWPQAMNDQCCHMTKLSSSHWLCPHDPTLSNICTDRSSKPVTKP 120
           FGTSSRGTQDQQVPSICWPQAMNDQCCHMTKLSSSHWLCPHDPTLSNICTDRSSKPVTKP
Sbjct: 61  FGTSSRGTQDQQVPSICWPQAMNDQCCHMTKLSSSHWLCPHDPTLSNICTDRSSKPVTKP 120

Query: 121 VLSEAVMLVILAEMAFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISF 180
           VLSEAVMLVILAEMAFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISF
Sbjct: 121 VLSEAVMLVILAEMAFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISF 180

Query: 181 IHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWW 240
           IHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWW
Sbjct: 181 IHLTKIYYLSGTGQDTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWW 240

Query: 241 RRSGTLGGGGGTAGSCQVQCSYL 263
           RRSGTLGGGGGTAGSCQVQCSYL
Sbjct: 241 RRSGTLGGGGGTAGSCQVQCSYL 263


>gi|169168219 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score =  264 bits (675), Expect = 5e-71
 Identities = 125/129 (96%), Positives = 126/129 (97%)

Query: 135 AFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 194
           +F   KHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ
Sbjct: 221 SFHDKKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 280

Query: 195 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 254
           DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG
Sbjct: 281 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 340

Query: 255 SCQVQCSYL 263
           SCQVQCSYL
Sbjct: 341 SCQVQCSYL 349


>gi|169167696 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 313

 Score =  264 bits (675), Expect = 5e-71
 Identities = 125/129 (96%), Positives = 126/129 (97%)

Query: 135 AFTGWKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 194
           +F   KHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ
Sbjct: 185 SFHDKKHWTLKATRITSSNPTPYQAEKAKMMGERTLDQFTVYFISFIHLTKIYYLSGTGQ 244

Query: 195 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 254
           DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG
Sbjct: 245 DTEGMELVTQIHAWVIDILFYRSRALLWRREASAEIQWYLTSVWWWRRSGTLGGGGGTAG 304

Query: 255 SCQVQCSYL 263
           SCQVQCSYL
Sbjct: 305 SCQVQCSYL 313


>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
          Length = 892

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 55  LEMSQSFGTSSRGTQDQQVPSICWP--QAMNDQCCHMTKLSSSHWLCPHDPTLSNICTDR 112
           L+ S   G+SS+GT  Q   S+  P  QAM D  CH++ L+ SH   P       +C D 
Sbjct: 694 LQASLGGGSSSQGTTKQLPASLLHPLFQAMTDPLCHLSSLTLSHCKLP-----DAVCRDL 748

Query: 113 SSKPVTKPVLSEAVML 128
           S      P L+E  +L
Sbjct: 749 SEALRAAPALTELGLL 764


>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
          Length = 822

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 106 SNICTDRSSKPVTKPVLSEAVMLVILAEMAFTGWKHWTLKATRITSSNPTPYQAEKAKMM 165
           S I T     PV      EAV L+ +AE A  G     L+A  +       Y+A+++KM+
Sbjct: 145 SGIDTSDMKYPVKSIPFDEAVKLIQIAERARQG----RLRALFMKQIYLQEYRAKQSKML 200

Query: 166 GERTLD 171
           G++  D
Sbjct: 201 GKKVTD 206


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
           sapiens]
          Length = 3177

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 101 HDPTLSNICTDRSSKPVTKPVLSEA-VMLVILAEMAFTGWKHWTLKATRITSSNPTPYQA 159
           H P ++  C   S  P T     +A V     A++ F     WT+            Y  
Sbjct: 6   HLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDV 65

Query: 160 EKAKMMGERTLDQFTVYF-----ISFI------------HLTKIYYLSGTGQDTEGMELV 202
            K+  +GE       V F       F+            H++ + Y+ GT Q  +G+E +
Sbjct: 66  VKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYI 125

Query: 203 TQIH 206
            Q H
Sbjct: 126 MQSH 129


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
            [Homo sapiens]
          Length = 2920

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 13/80 (16%)

Query: 6    VIQVVQVMQVMQVMQVVQVMQVVQLQASWQRSTLAPEVAMKRVGITETPLEMSQSFGTSS 65
            VI V Q+ Q +QV+  +Q   V Q+QA  Q+S +  ++ +      + P+++ Q     S
Sbjct: 2432 VIAVPQLQQQVQVLSQIQSQVVAQIQA--QQSGVPQQIKL------QLPIQIQQ-----S 2478

Query: 66   RGTQDQQVPSICWPQAMNDQ 85
               Q  Q+ ++   QA + Q
Sbjct: 2479 SAVQTHQIQNVVTVQAASVQ 2498


>gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]
          Length = 515

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 176 YFISFIHLTKIY----YLSGTGQDTEGMELVTQIHAWVIDILFYRSRALLWRRE 225
           Y+I+  H    +    YL  TG+    M+ +T++H  ++ + ++ S + +W  E
Sbjct: 351 YWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTE 404


>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
          Length = 1271

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 8   QVVQVMQVMQ------VMQVVQVMQVVQLQASWQRSTLAPEVAMKRVGITETPLEMSQSF 61
           Q++Q +Q+ Q      ++Q +    VVQLQA   + T A   A      T TPLE   SF
Sbjct: 205 QLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAAN-----TLTPLEQGVSF 259


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.130    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,262,380
Number of Sequences: 37866
Number of extensions: 365352
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 10
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.