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Search of human proteins with 169165882
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165882 PREDICTED: hypothetical protein [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165483 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|169165882 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|169165066 PREDICTED: hypothetical protein [Homo sapiens] 374 e-104
gi|171906593 branched chain ketoacid dehydrogenase kinase isofor... 32 0.24
gi|171906589 branched chain ketoacid dehydrogenase kinase isofor... 32 0.24
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 30 0.91
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 30 0.91
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 30 0.91
gi|223468597 integrin alpha-V isoform 3 precursor [Homo sapiens] 28 4.5
gi|223468595 integrin alpha-V isoform 2 [Homo sapiens] 28 4.5
gi|4504763 integrin alpha-V isoform 1 precursor [Homo sapiens] 28 4.5
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 28 4.5
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ... 27 7.7
>gi|169165483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 377 bits (969), Expect = e-105
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR
Sbjct: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
Query: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP 120
SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP
Sbjct: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP 120
Query: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK
Sbjct: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
Query: 181 MCCFS 185
MCCFS
Sbjct: 181 MCCFS 185
>gi|169165882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 377 bits (969), Expect = e-105
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR
Sbjct: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
Query: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP 120
SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP
Sbjct: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP 120
Query: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK
Sbjct: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
Query: 181 MCCFS 185
MCCFS
Sbjct: 181 MCCFS 185
>gi|169165066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 374 bits (960), Expect = e-104
Identities = 184/185 (99%), Positives = 184/185 (99%)
Query: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR
Sbjct: 1 MAVVVAAAASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAARCRPRRHVAAR 60
Query: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGYHVTLRVAQIRTGRLSPLPP 120
SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAG HVTLRVAQIRTGRLSPLPP
Sbjct: 61 SELRHFVTSHHRQSACSFRFLAPSRIPPRLGLFAGRGEAGCHVTLRVAQIRTGRLSPLPP 120
Query: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK
Sbjct: 121 PQVKNLRHKRLSNLSEITAVWCRSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLK 180
Query: 181 MCCFS 185
MCCFS
Sbjct: 181 MCCFS 185
>gi|171906593 branched chain ketoacid dehydrogenase kinase isoform b
[Homo sapiens]
Length = 365
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 41 PTAGATSAARCRPR-----RHVAARSELRHFVTSHHRQSACSFRFLAPS-RIPPRLGLFA 94
P G A R R HV E VTS + QSA PS R+ P + L+A
Sbjct: 19 PLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA 78
Query: 95 GRGEAGYHV 103
GR + G H+
Sbjct: 79 GRSQDGSHL 87
>gi|171906589 branched chain ketoacid dehydrogenase kinase isoform a
[Homo sapiens]
Length = 412
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 41 PTAGATSAARCRPR-----RHVAARSELRHFVTSHHRQSACSFRFLAPS-RIPPRLGLFA 94
P G A R R HV E VTS + QSA PS R+ P + L+A
Sbjct: 19 PLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA 78
Query: 95 GRGEAGYHV 103
GR + G H+
Sbjct: 79 GRSQDGSHL 87
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 9 ASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAAR 50
A A P AGL R + H P H+ SP + A ++AR
Sbjct: 97 ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASAR 138
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 9 ASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAAR 50
A A P AGL R + H P H+ SP + A ++AR
Sbjct: 97 ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASAR 138
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 0.91
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 9 ASPALSAAPLTLDCAGLASRRLLHEPKHKHSSPTAGATSAAR 50
A A P AGL R + H P H+ SP + A ++AR
Sbjct: 97 ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASAR 138
>gi|223468597 integrin alpha-V isoform 3 precursor [Homo sapiens]
Length = 1012
Score = 28.1 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 157 ELLNTILVKDNPRCSLPSTGDLLKMCCFS 185
E+ +IL +DN CSLP T LK+ CF+
Sbjct: 442 EVYPSILNQDNKTCSLPGTA--LKVSCFN 468
>gi|223468595 integrin alpha-V isoform 2 [Homo sapiens]
Length = 1002
Score = 28.1 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 157 ELLNTILVKDNPRCSLPSTGDLLKMCCFS 185
E+ +IL +DN CSLP T LK+ CF+
Sbjct: 432 EVYPSILNQDNKTCSLPGTA--LKVSCFN 458
>gi|4504763 integrin alpha-V isoform 1 precursor [Homo sapiens]
Length = 1048
Score = 28.1 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 157 ELLNTILVKDNPRCSLPSTGDLLKMCCFS 185
E+ +IL +DN CSLP T LK+ CF+
Sbjct: 478 EVYPSILNQDNKTCSLPGTA--LKVSCFN 504
>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
[Homo sapiens]
Length = 390
Score = 28.1 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 113 GRLSPLPPPQVKNLRHKRLSNLSEITAVWCRSWILICGG 151
GRL P PPP +R K L+ L + VW ++ C G
Sbjct: 16 GRLLPQPPPPPPPVRRK-LALLFAMLCVWLYMFLYSCAG 53
>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
sapiens]
Length = 411
Score = 27.3 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 143 RSWILICGGLAPERELLNTILVKDNPRCSLPSTGDLLKMCC 183
RSW +CG LA + L + N CS P L C
Sbjct: 28 RSWAFLCGSLATAPQHLRATAGEANEPCSRPEPEFLGTAAC 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,421
Number of Sequences: 37866
Number of extensions: 370198
Number of successful extensions: 1227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 13
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.