Guide to the Human Genome
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Name: LOC729317 Sequence: fasta or formatted (293aa) NCBI GI: 169163967
Description:

PREDICTED: similar to voltage-dependent anion channel 2

Referenced in:

Mitochondria

Other entries for this name:
alt prot [293aa] PREDICTED: similar to voltage-dependent anion channel 2
alt prot [293aa] PREDICTED: similar to voltage-dependent anion channel 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         21           2
 C cysteine            3.1          9           1
 D aspartate           5.8         17           1
 E glutamate           4.1         12           1
 F phenylalanine       4.8         14           1
 G glycine            11.6         34           2
 H histidine           1.4          4           1
 I isoleucine          4.8         14           1
 K lysine              7.8         23           2
 L leucine             7.5         22           1
 M methionine          1.0          3           1
 N asparagine          5.1         15           2
 P proline             2.4          7           2
 Q glutamine           2.7          8           1
 R arginine            2.4          7           1
 S serine              7.8         23           2
 T threonine          10.6         31           2
 V valine              5.1         15           1
 W tryptophan          1.4          4           1
 Y tyrosine            3.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to voltage-dependent anion chann... 
LOC729317             0.997   PREDICTED: similar to voltage-dependent anion chann...
LOC729317             0.995   PREDICTED: similar to voltage-dependent anion chann...
VDAC2                 0.986   voltage-dependent anion channel 2 
VDAC1                 0.735   voltage-dependent anion channel 1 
VDAC3                 0.713   voltage-dependent anion channel 3 isoform b 
VDAC3                 0.704   voltage-dependent anion channel 3 isoform a 
CHST1                 0.009   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
ARHGEF12              0.007   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
COL6A3                0.007   alpha 3 type VI collagen isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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