Guide to the Human Genome
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Name: VDAC2 Sequence: fasta or formatted (294aa) NCBI GI: 42476281
Description:

voltage-dependent anion channel 2

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         21           2
 C cysteine            3.1          9           1
 D aspartate           5.8         17           1
 E glutamate           4.1         12           1
 F phenylalanine       5.1         15           1
 G glycine            11.6         34           2
 H histidine           1.4          4           1
 I isoleucine          4.4         13           1
 K lysine              7.8         23           2
 L leucine             7.8         23           1
 M methionine          1.0          3           1
 N asparagine          5.1         15           2
 P proline             2.4          7           2
 Q glutamine           2.7          8           1
 R arginine            2.4          7           1
 S serine              7.8         23           2
 T threonine          10.5         31           2
 V valine              5.1         15           1
 W tryptophan          1.4          4           1
 Y tyrosine            3.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent anion channel 2 
LOC729317             0.990   PREDICTED: similar to voltage-dependent anion chann...
LOC729317             0.985   PREDICTED: similar to voltage-dependent anion chann...
LOC729317             0.981   PREDICTED: similar to voltage-dependent anion chann...
VDAC1                 0.747   voltage-dependent anion channel 1 
VDAC3                 0.725   voltage-dependent anion channel 3 isoform b 
VDAC3                 0.718   voltage-dependent anion channel 3 isoform a 
CHST1                 0.009   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
LOC100287163          0.009   PREDICTED: hypothetical protein XP_002343923 
ARHGEF12              0.007   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ZNF717                0.007   zinc finger protein 717 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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