BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|167001643 mevalonate kinase [Homo sapiens] (396 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|167001643 mevalonate kinase [Homo sapiens] 786 0.0 gi|4557769 mevalonate kinase [Homo sapiens] 786 0.0 gi|4503895 galactokinase 1 [Homo sapiens] 48 1e-05 gi|48527957 galactokinase 2 isoform 2 [Homo sapiens] 37 0.041 gi|4503897 galactokinase 2 isoform 1 [Homo sapiens] 37 0.041 gi|21536371 telomerase-associated protein 1 [Homo sapiens] 32 1.3 gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens] 31 1.7 gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 31 2.2 gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isofor... 30 5.0 gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isofor... 30 5.0 gi|41399285 chaperonin [Homo sapiens] 29 6.5 gi|31542947 chaperonin [Homo sapiens] 29 6.5 gi|63175654 fucokinase [Homo sapiens] 29 6.5 gi|161019170 mucin 5AC [Homo sapiens] 29 8.5 gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 8.5 gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 29 8.5 >gi|167001643 mevalonate kinase [Homo sapiens] Length = 396 Score = 786 bits (2029), Expect = 0.0 Identities = 396/396 (100%), Positives = 396/396 (100%) Query: 1 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR Sbjct: 1 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60 Query: 61 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC Sbjct: 61 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120 Query: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180 Query: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240 Query: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300 Query: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL Sbjct: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360 Query: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL Sbjct: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396 >gi|4557769 mevalonate kinase [Homo sapiens] Length = 396 Score = 786 bits (2029), Expect = 0.0 Identities = 396/396 (100%), Positives = 396/396 (100%) Query: 1 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR Sbjct: 1 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60 Query: 61 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC Sbjct: 61 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120 Query: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180 Query: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240 Query: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300 Query: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL Sbjct: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360 Query: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL Sbjct: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396 >gi|4503895 galactokinase 1 [Homo sapiens] Length = 392 Score = 48.1 bits (113), Expect = 1e-05 Identities = 96/374 (25%), Positives = 140/374 (37%), Gaps = 80/374 (21%) Query: 6 LLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKRAWDVA 65 L VSAPG+V L GEH + + L ++L L T L P +G V L + G A + Sbjct: 30 LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEG---ADEPQ 86 Query: 66 RLQ-SLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQR 124 RLQ L T+ Q + T +K V + Y Sbjct: 87 RLQFPLPTA---QRSLEPGTPRWANYVKGV------------------IQYY-----PAA 120 Query: 125 ALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLEL 184 LP VV S +P G GL SSA+ V L +C + G R Sbjct: 121 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPD------SGTIAAR-------- 166 Query: 185 INKWAFQGERMIHGNPSGV-DNAVSTWGGALRYHQGKISSLKRS------PALQILLTNT 237 + Q E G P G+ D +S G SL+ S P L +L+TN+ Sbjct: 167 -AQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNS 225 Query: 238 KVPRNTRALVAGVRNRLLKFPEIVAPL----LTSIDAISLECER-------------VLG 280 V + + VR R + E+ L L + LE R V+G Sbjct: 226 NVRHSLASSEYPVRRR--QCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVG 283 Query: 281 EMGEAPAPEQYLVLEE-------LIDMNQHHLNALGVGHASLDQLCQVTRA-RGLH-SKL 331 E+ L + +++ ++ + V LDQL + A G++ S++ Sbjct: 284 EIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRM 343 Query: 332 TGAGGGGCGITLLK 345 TG G GGC +TLL+ Sbjct: 344 TGGGFGGCTVTLLE 357 >gi|48527957 galactokinase 2 isoform 2 [Homo sapiens] Length = 447 Score = 36.6 bits (83), Expect = 0.041 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%) Query: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341 APE + +L EL MNQ H++ + S LDQL + R G S+LTGAG GGC + Sbjct: 341 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 398 Query: 342 TLL 344 +++ Sbjct: 399 SMV 401 >gi|4503897 galactokinase 2 isoform 1 [Homo sapiens] Length = 458 Score = 36.6 bits (83), Expect = 0.041 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%) Query: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341 APE + +L EL MNQ H++ + S LDQL + R G S+LTGAG GGC + Sbjct: 352 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 409 Query: 342 TLL 344 +++ Sbjct: 410 SMV 412 >gi|21536371 telomerase-associated protein 1 [Homo sapiens] Length = 2627 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 201 SGVDNAVSTWGGALRYHQGKISSLKRSPALQILLT 235 +G D V W G+L +G + SL SPAL + L+ Sbjct: 1902 AGEDGKVQVWSGSLGRPRGHLGSLSLSPALSVALS 1936 >gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens] Length = 786 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 27 VALAVSLNLRTFL---RLQPHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTP 83 + + ++L++R + ++P N K + L I +A +A +S ++G+VTT Sbjct: 427 IGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 486 Query: 84 TSEQVEKLKEVAGLPDD 100 E + LKE+ P D Sbjct: 487 NHEDLSLLKEILKRPVD 503 >gi|122114658 hypothetical protein LOC23053 [Homo sapiens] Length = 1842 Score = 30.8 bits (68), Expect = 2.2 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 316 DQLCQVTR-----ARGLHSKLTGAGGGGCGITLLKPGLEQPEVE-ATKQALTSCGFDCLE 369 + LCQ R + G +S G GGGG G T ++ GL P VE + KQ F+ +E Sbjct: 35 ESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVE 94 >gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isoform 1 [Homo sapiens] Length = 2710 Score = 29.6 bits (65), Expect = 5.0 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%) Query: 275 CERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVT-RARGLHSKLTG 333 C GE +PAP + LV E + ++ H +C VT + GL S Sbjct: 2457 CRVESGENCSSPAPREELVPAEETEQDKEHT-------CETLLMCIVTVLSHGLRS---- 2505 Query: 334 AGGGGCGITLLKPGLEQP 351 GGG G L KP E+P Sbjct: 2506 --GGGVGDVLRKPSKEEP 2521 >gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isoform 2 [Homo sapiens] Length = 2695 Score = 29.6 bits (65), Expect = 5.0 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%) Query: 275 CERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVT-RARGLHSKLTG 333 C GE +PAP + LV E + ++ H +C VT + GL S Sbjct: 2442 CRVESGENCSSPAPREELVPAEETEQDKEHT-------CETLLMCIVTVLSHGLRS---- 2490 Query: 334 AGGGGCGITLLKPGLEQP 351 GGG G L KP E+P Sbjct: 2491 --GGGVGDVLRKPSKEEP 2506 >gi|41399285 chaperonin [Homo sapiens] Length = 573 Score = 29.3 bits (64), Expect = 6.5 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 4 EVLLVSAPG---------KVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLP 54 +V+ V APG K + V G+ L ++L +QPH GKV + Sbjct: 296 QVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLE-----DVQPHDLGKVGEVIV 350 Query: 55 N----IGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAV 103 + +K D A+++ +EQ DVTT E+ + + +A L D AV Sbjct: 351 TKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAV 403 >gi|31542947 chaperonin [Homo sapiens] Length = 573 Score = 29.3 bits (64), Expect = 6.5 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 4 EVLLVSAPG---------KVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLP 54 +V+ V APG K + V G+ L ++L +QPH GKV + Sbjct: 296 QVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLE-----DVQPHDLGKVGEVIV 350 Query: 55 N----IGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAV 103 + +K D A+++ +EQ DVTT E+ + + +A L D AV Sbjct: 351 TKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAV 403 >gi|63175654 fucokinase [Homo sapiens] Length = 1084 Score = 29.3 bits (64), Expect = 6.5 Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 130 DIVVWSELPPGAGLGSSAAYSVCLAAAL 157 ++ WSELP G+GLG+S+ + AAL Sbjct: 827 ELHTWSELPHGSGLGTSSILAGTALAAL 854 >gi|161019170 mucin 5AC [Homo sapiens] Length = 6207 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/43 (37%), Positives = 23/43 (53%) Query: 300 MNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGIT 342 ++ H L V SL+ ++ RARG+ S GA GG C +T Sbjct: 5653 ISDHCRGRLEVPCQSLEAYAELCRARGVCSDWRGATGGLCDLT 5695 >gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] Length = 5765 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/43 (37%), Positives = 23/43 (53%) Query: 300 MNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGIT 342 ++ H L V SL+ ++ RARG+ S GA GG C +T Sbjct: 5319 ISDHCRGRLEVPCQSLEAYAELCRARGVCSDWRGATGGLCDLT 5361 >gi|21237805 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 isoform a [Homo sapiens] Length = 1214 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Query: 135 SELPPGAGLGSSAAYSVCLAAA----LLTVCEEIPNP 167 S LP G GLGS+AA S + AA LL +P+P Sbjct: 1155 SSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDP 1191 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,032,242 Number of Sequences: 37866 Number of extensions: 753646 Number of successful extensions: 1650 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1637 Number of HSP's gapped (non-prelim): 25 length of query: 396 length of database: 18,247,518 effective HSP length: 104 effective length of query: 292 effective length of database: 14,309,454 effective search space: 4178360568 effective search space used: 4178360568 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.