Guide to the Human Genome
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Search of human proteins with 167001643

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|167001643 mevalonate kinase [Homo sapiens]
         (396 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|167001643 mevalonate kinase [Homo sapiens]                         786   0.0  
gi|4557769 mevalonate kinase [Homo sapiens]                           786   0.0  
gi|4503895 galactokinase 1 [Homo sapiens]                              48   1e-05
gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]                   37   0.041
gi|4503897 galactokinase 2 isoform 1 [Homo sapiens]                    37   0.041
gi|21536371 telomerase-associated protein 1 [Homo sapiens]             32   1.3  
gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]                31   1.7  
gi|122114658 hypothetical protein LOC23053 [Homo sapiens]              31   2.2  
gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isofor...    30   5.0  
gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isofor...    30   5.0  
gi|41399285 chaperonin [Homo sapiens]                                  29   6.5  
gi|31542947 chaperonin [Homo sapiens]                                  29   6.5  
gi|63175654 fucokinase [Homo sapiens]                                  29   6.5  
gi|161019170 mucin 5AC [Homo sapiens]                                  29   8.5  
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]       29   8.5  
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re...    29   8.5  

>gi|167001643 mevalonate kinase [Homo sapiens]
          Length = 396

 Score =  786 bits (2029), Expect = 0.0
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60
           MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
Sbjct: 1   MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60

Query: 61  AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120
           AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
Sbjct: 61  AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120

Query: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180
           RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180

Query: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240
           DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240

Query: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300
           RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300

Query: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360
           NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
Sbjct: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360

Query: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396
           TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
Sbjct: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396


>gi|4557769 mevalonate kinase [Homo sapiens]
          Length = 396

 Score =  786 bits (2029), Expect = 0.0
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60
           MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
Sbjct: 1   MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR 60

Query: 61  AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120
           AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
Sbjct: 61  AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC 120

Query: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180
           RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180

Query: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240
           DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240

Query: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300
           RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM 300

Query: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360
           NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
Sbjct: 301 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL 360

Query: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396
           TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
Sbjct: 361 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL 396


>gi|4503895 galactokinase 1 [Homo sapiens]
          Length = 392

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 96/374 (25%), Positives = 140/374 (37%), Gaps = 80/374 (21%)

Query: 6   LLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKRAWDVA 65
           L VSAPG+V L GEH   +  + L ++L L T L   P  +G V L   + G   A +  
Sbjct: 30  LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEG---ADEPQ 86

Query: 66  RLQ-SLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQR 124
           RLQ  L T+   Q  +   T      +K V                  +  Y        
Sbjct: 87  RLQFPLPTA---QRSLEPGTPRWANYVKGV------------------IQYY-----PAA 120

Query: 125 ALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLEL 184
            LP    VV S +P G GL SSA+  V     L  +C +       G    R        
Sbjct: 121 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPD------SGTIAAR-------- 166

Query: 185 INKWAFQGERMIHGNPSGV-DNAVSTWGGALRYHQGKISSLKRS------PALQILLTNT 237
             +   Q E    G P G+ D  +S  G           SL+ S      P L +L+TN+
Sbjct: 167 -AQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNS 225

Query: 238 KVPRNTRALVAGVRNRLLKFPEIVAPL----LTSIDAISLECER-------------VLG 280
            V  +  +    VR R  +  E+   L    L  +    LE  R             V+G
Sbjct: 226 NVRHSLASSEYPVRRR--QCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVG 283

Query: 281 EMGEAPAPEQYLVLEE-------LIDMNQHHLNALGVGHASLDQLCQVTRA-RGLH-SKL 331
           E+         L   +       +++ ++   +   V    LDQL +   A  G++ S++
Sbjct: 284 EIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRM 343

Query: 332 TGAGGGGCGITLLK 345
           TG G GGC +TLL+
Sbjct: 344 TGGGFGGCTVTLLE 357


>gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]
          Length = 447

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)

Query: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341
           APE  + +L EL  MNQ H++   +   S   LDQL  + R  G   S+LTGAG GGC +
Sbjct: 341 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 398

Query: 342 TLL 344
           +++
Sbjct: 399 SMV 401


>gi|4503897 galactokinase 2 isoform 1 [Homo sapiens]
          Length = 458

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)

Query: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341
           APE  + +L EL  MNQ H++   +   S   LDQL  + R  G   S+LTGAG GGC +
Sbjct: 352 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 409

Query: 342 TLL 344
           +++
Sbjct: 410 SMV 412


>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
          Length = 2627

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 201  SGVDNAVSTWGGALRYHQGKISSLKRSPALQILLT 235
            +G D  V  W G+L   +G + SL  SPAL + L+
Sbjct: 1902 AGEDGKVQVWSGSLGRPRGHLGSLSLSPALSVALS 1936


>gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]
          Length = 786

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 27  VALAVSLNLRTFL---RLQPHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTP 83
           + + ++L++R  +    ++P  N K +  L  I   +A  +A      +S  ++G+VTT 
Sbjct: 427 IGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 486

Query: 84  TSEQVEKLKEVAGLPDD 100
             E +  LKE+   P D
Sbjct: 487 NHEDLSLLKEILKRPVD 503


>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
          Length = 1842

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 316 DQLCQVTR-----ARGLHSKLTGAGGGGCGITLLKPGLEQPEVE-ATKQALTSCGFDCLE 369
           + LCQ  R     + G +S   G GGGG G T ++ GL  P VE + KQ      F+ +E
Sbjct: 35  ESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVE 94


>gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isoform 1
            [Homo sapiens]
          Length = 2710

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 275  CERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVT-RARGLHSKLTG 333
            C    GE   +PAP + LV  E  + ++ H             +C VT  + GL S    
Sbjct: 2457 CRVESGENCSSPAPREELVPAEETEQDKEHT-------CETLLMCIVTVLSHGLRS---- 2505

Query: 334  AGGGGCGITLLKPGLEQP 351
              GGG G  L KP  E+P
Sbjct: 2506 --GGGVGDVLRKPSKEEP 2521


>gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isoform 2
            [Homo sapiens]
          Length = 2695

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 275  CERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVT-RARGLHSKLTG 333
            C    GE   +PAP + LV  E  + ++ H             +C VT  + GL S    
Sbjct: 2442 CRVESGENCSSPAPREELVPAEETEQDKEHT-------CETLLMCIVTVLSHGLRS---- 2490

Query: 334  AGGGGCGITLLKPGLEQP 351
              GGG G  L KP  E+P
Sbjct: 2491 --GGGVGDVLRKPSKEEP 2506


>gi|41399285 chaperonin [Homo sapiens]
          Length = 573

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 4   EVLLVSAPG---------KVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLP 54
           +V+ V APG         K +       V G+  L ++L       +QPH  GKV   + 
Sbjct: 296 QVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLE-----DVQPHDLGKVGEVIV 350

Query: 55  N----IGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAV 103
                + +K   D A+++      +EQ DVTT   E+ +  + +A L D  AV
Sbjct: 351 TKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAV 403


>gi|31542947 chaperonin [Homo sapiens]
          Length = 573

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 4   EVLLVSAPG---------KVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLP 54
           +V+ V APG         K +       V G+  L ++L       +QPH  GKV   + 
Sbjct: 296 QVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLE-----DVQPHDLGKVGEVIV 350

Query: 55  N----IGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAV 103
                + +K   D A+++      +EQ DVTT   E+ +  + +A L D  AV
Sbjct: 351 TKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAV 403


>gi|63175654 fucokinase [Homo sapiens]
          Length = 1084

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 130 DIVVWSELPPGAGLGSSAAYSVCLAAAL 157
           ++  WSELP G+GLG+S+  +    AAL
Sbjct: 827 ELHTWSELPHGSGLGTSSILAGTALAAL 854


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 300  MNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGIT 342
            ++ H    L V   SL+   ++ RARG+ S   GA GG C +T
Sbjct: 5653 ISDHCRGRLEVPCQSLEAYAELCRARGVCSDWRGATGGLCDLT 5695


>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
          Length = 5765

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 300  MNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGIT 342
            ++ H    L V   SL+   ++ RARG+ S   GA GG C +T
Sbjct: 5319 ISDHCRGRLEVPCQSLEAYAELCRARGVCSDWRGATGGLCDLT 5361


>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin c2 isoform a [Homo sapiens]
          Length = 1214

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 135  SELPPGAGLGSSAAYSVCLAAA----LLTVCEEIPNP 167
            S LP G GLGS+AA S  + AA    LL     +P+P
Sbjct: 1155 SSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDP 1191


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,032,242
Number of Sequences: 37866
Number of extensions: 753646
Number of successful extensions: 1650
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 25
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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