Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 166235186
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235186 APAF1 interacting protein [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235186 APAF1 interacting protein [Homo sapiens] 513 e-146
gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens] 36 0.026
gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens] 36 0.026
gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens] 36 0.026
gi|38570135 mitogen-activated protein kinase kinase kinase kinas... 30 2.5
gi|14589909 mitogen-activated protein kinase kinase kinase kinas... 30 2.5
gi|55741641 kinase D-interacting substrate of 220 kDa [Homo sapi... 29 3.2
gi|221316707 NADPH dependent diflavin oxidoreductase 1 isoform d... 28 5.5
gi|221316709 NADPH dependent diflavin oxidoreductase 1 isoform c... 28 5.5
gi|221316705 NADPH dependent diflavin oxidoreductase 1 isoform a... 28 5.5
gi|7657393 NADPH dependent diflavin oxidoreductase 1 isoform b [... 28 5.5
gi|4759166 secreted phosphoprotein 1 isoform b [Homo sapiens] 28 9.4
gi|91598939 secreted phosphoprotein 1 isoform c [Homo sapiens] 28 9.4
gi|91206462 secreted phosphoprotein 1 isoform a [Homo sapiens] 28 9.4
gi|9257190 adducin 2 isoform e [Homo sapiens] 28 9.4
gi|89276787 adducin 2 isoform b [Homo sapiens] 28 9.4
gi|9257192 adducin 2 isoform a [Homo sapiens] 28 9.4
>gi|166235186 APAF1 interacting protein [Homo sapiens]
Length = 242
Score = 513 bits (1321), Expect = e-146
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP 60
MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP
Sbjct: 1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP 60
Query: 61 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 120
SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
Sbjct: 61 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA 120
Query: 121 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA 180
AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA
Sbjct: 121 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA 180
Query: 181 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG 240
MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG
Sbjct: 181 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG 240
Query: 241 IV 242
IV
Sbjct: 241 IV 242
>gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 36.2 bits (82), Expect = 0.026
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 28/189 (14%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW IS+ K D I I P G+ ++ +I + + S + K+ +
Sbjct: 152 GWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHT 211
Query: 96 QCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRY 155
+P T VIH H+ A + + G I+ + ++ G YY Y
Sbjct: 212 GFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGI-LPISQESLLLG-----DVAYYDY 265
Query: 156 DDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEKAKTMCECY 214
L EE++ + ++ + SC VLV R HGV GET E E +
Sbjct: 266 QGSL---------EEQEERIQLQKVLGP---SCKVLVLRNHGVVALGETLE------EAF 307
Query: 215 DYLFDIAVS 223
Y+F++ ++
Sbjct: 308 HYIFNVQLA 316
>gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 36.2 bits (82), Expect = 0.026
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 28/189 (14%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW IS+ K D I I P G+ ++ +I + + S + K+ +
Sbjct: 152 GWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHT 211
Query: 96 QCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRY 155
+P T VIH H+ A + + G I+ + ++ G YY Y
Sbjct: 212 GFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGI-LPISQESLLLG-----DVAYYDY 265
Query: 156 DDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEKAKTMCECY 214
L EE++ + ++ + SC VLV R HGV GET E E +
Sbjct: 266 QGSL---------EEQEERIQLQKVLGP---SCKVLVLRNHGVVALGETLE------EAF 307
Query: 215 DYLFDIAVS 223
Y+F++ ++
Sbjct: 308 HYIFNVQLA 316
>gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens]
Length = 706
Score = 36.2 bits (82), Expect = 0.026
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 28/189 (14%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW IS+ K D I I P G+ ++ +I + + S + K+ +
Sbjct: 152 GWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHT 211
Query: 96 QCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRY 155
+P T VIH H+ A + + G I+ + ++ G YY Y
Sbjct: 212 GFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGI-LPISQESLLLG-----DVAYYDY 265
Query: 156 DDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEKAKTMCECY 214
L EE++ + ++ + SC VLV R HGV GET E E +
Sbjct: 266 QGSL---------EEQEERIQLQKVLGP---SCKVLVLRNHGVVALGETLE------EAF 307
Query: 215 DYLFDIAVS 223
Y+F++ ++
Sbjct: 308 HYIFNVQLA 316
>gi|38570135 mitogen-activated protein kinase kinase kinase kinase 5
[Homo sapiens]
Length = 846
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 114 IHTHSKAAVMATLLFPGREFKITHQE--MIKGIKKCTSGGYY 153
+HT AAV L PG +F + QE M+K K C Y+
Sbjct: 40 VHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYF 81
>gi|14589909 mitogen-activated protein kinase kinase kinase kinase 5
[Homo sapiens]
Length = 846
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 114 IHTHSKAAVMATLLFPGREFKITHQE--MIKGIKKCTSGGYY 153
+HT AAV L PG +F + QE M+K K C Y+
Sbjct: 40 VHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYF 81
>gi|55741641 kinase D-interacting substrate of 220 kDa [Homo sapiens]
Length = 1771
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 50 LKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRG 109
+K GD I + SGV P D + + D SG K S+ + LF ++G
Sbjct: 1452 MKRGDVIDYSSSGVSTNDASPLDPITEEDEKSDQSGSKLLPGKKSSERSSLFQTDLKLKG 1511
Query: 110 AG 111
+G
Sbjct: 1512 SG 1513
>gi|221316707 NADPH dependent diflavin oxidoreductase 1 isoform d
[Homo sapiens]
Length = 521
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 45 GGGISLKHGDEIYIAPSG--------VQKERIQPEDMFVCDINEKDISGPS 87
G GIS GD + I PS Q + P+ +F+ E D+S P+
Sbjct: 203 GSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPREPDVSSPT 253
>gi|221316709 NADPH dependent diflavin oxidoreductase 1 isoform c
[Homo sapiens]
Length = 590
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 45 GGGISLKHGDEIYIAPSG--------VQKERIQPEDMFVCDINEKDISGPS 87
G GIS GD + I PS Q + P+ +F+ E D+S P+
Sbjct: 237 GSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPREPDVSSPT 287
>gi|221316705 NADPH dependent diflavin oxidoreductase 1 isoform a
[Homo sapiens]
Length = 606
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 45 GGGISLKHGDEIYIAPSG--------VQKERIQPEDMFVCDINEKDISGPS 87
G GIS GD + I PS Q + P+ +F+ E D+S P+
Sbjct: 237 GSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPREPDVSSPT 287
>gi|7657393 NADPH dependent diflavin oxidoreductase 1 isoform b
[Homo sapiens]
Length = 597
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 45 GGGISLKHGDEIYIAPSG--------VQKERIQPEDMFVCDINEKDISGPS 87
G GIS GD + I PS Q + P+ +F+ E D+S P+
Sbjct: 237 GSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPREPDVSSPT 287
>gi|4759166 secreted phosphoprotein 1 isoform b [Homo sapiens]
Length = 300
Score = 27.7 bits (60), Expect = 9.4
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 135 ITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMN 182
I QE+ K ++ S ++ ++DMLVV ++ E+K LK R++H ++
Sbjct: 247 IDSQELSKVSREFHSHEFHSHEDMLVVD-PKSKEEDKHLKFRISHELD 293
>gi|91598939 secreted phosphoprotein 1 isoform c [Homo sapiens]
Length = 287
Score = 27.7 bits (60), Expect = 9.4
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 135 ITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMN 182
I QE+ K ++ S ++ ++DMLVV ++ E+K LK R++H ++
Sbjct: 234 IDSQELSKVSREFHSHEFHSHEDMLVVD-PKSKEEDKHLKFRISHELD 280
>gi|91206462 secreted phosphoprotein 1 isoform a [Homo sapiens]
Length = 314
Score = 27.7 bits (60), Expect = 9.4
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 135 ITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMN 182
I QE+ K ++ S ++ ++DMLVV ++ E+K LK R++H ++
Sbjct: 261 IDSQELSKVSREFHSHEFHSHEDMLVVD-PKSKEEDKHLKFRISHELD 307
>gi|9257190 adducin 2 isoform e [Homo sapiens]
Length = 643
Score = 27.7 bits (60), Expect = 9.4
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW + ++L K D I+P GV + + +I + + K S
Sbjct: 148 GWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVE--------KGS 199
Query: 96 QCTPLFMNAYTMRGA--------GAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKC 147
C P+ + + A +IH H+ A + + G ++H ++ G
Sbjct: 200 SCFPVDTTGFCLHSAIYAARPDVRCIIHLHTPATAAVSAMKWGL-LPVSHNALLVG---- 254
Query: 148 TSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEK 206
YY ++ + E + +L+ + +C +LV R HGV G+T E+
Sbjct: 255 -DMAYYDFNGEM-----EQEADRINLQKCLG-------PTCKILVLRNHGVVALGDTVEE 301
Query: 207 A 207
A
Sbjct: 302 A 302
>gi|89276787 adducin 2 isoform b [Homo sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 9.4
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW + ++L K D I+P GV + + +I + + K S
Sbjct: 148 GWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVE--------KGS 199
Query: 96 QCTPLFMNAYTMRGA--------GAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKC 147
C P+ + + A +IH H+ A + + G ++H ++ G
Sbjct: 200 SCFPVDTTGFCLHSAIYAARPDVRCIIHLHTPATAAVSAMKWGL-LPVSHNALLVG---- 254
Query: 148 TSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEK 206
YY ++ + E + +L+ + +C +LV R HGV G+T E+
Sbjct: 255 -DMAYYDFNGEM-----EQEADRINLQKCLG-------PTCKILVLRNHGVVALGDTVEE 301
Query: 207 A 207
A
Sbjct: 302 A 302
>gi|9257192 adducin 2 isoform a [Homo sapiens]
Length = 726
Score = 27.7 bits (60), Expect = 9.4
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 39 GWVTGTGGGISL---KHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKS 95
GW + ++L K D I+P GV + + +I + + K S
Sbjct: 148 GWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVE--------KGS 199
Query: 96 QCTPLFMNAYTMRGA--------GAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKC 147
C P+ + + A +IH H+ A + + G ++H ++ G
Sbjct: 200 SCFPVDTTGFCLHSAIYAARPDVRCIIHLHTPATAAVSAMKWGL-LPVSHNALLVG---- 254
Query: 148 TSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLV-RRHGVYVWGETWEK 206
YY ++ + E + +L+ + +C +LV R HGV G+T E+
Sbjct: 255 -DMAYYDFNGEM-----EQEADRINLQKCLG-------PTCKILVLRNHGVVALGDTVEE 301
Query: 207 A 207
A
Sbjct: 302 A 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,796,325
Number of Sequences: 37866
Number of extensions: 500095
Number of successful extensions: 896
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 18
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.