Search of human proteins with 15718675

Search of human proteins with 15718675

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15718675 arachidonate 5-lipoxygenase-activating protein
[Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15718675 arachidonate 5-lipoxygenase-activating protein [Homo...   323   5e-89
gi|4505181 microsomal glutathione S-transferase 2 [Homo sapiens]       85   3e-17
gi|22035629 leukotriene C4 synthase [Homo sapiens]                     78   4e-15
gi|4758714 microsomal glutathione S-transferase 3 [Homo sapiens]       31   0.53 
gi|21362112 limb region 1 protein [Homo sapiens]                       30   1.2  
gi|32967300 C1q and tumor necrosis factor related protein 6 [Hom...    29   1.5  
gi|32967294 C1q and tumor necrosis factor related protein 6 [Hom...    29   1.5  
gi|148612887 choline transporter-like protein 4 [Homo sapiens]         27   5.8  

>gi|15718675 arachidonate 5-lipoxygenase-activating protein [Homo
           sapiens]
          Length = 161

 Score =  323 bits (827), Expect = 5e-89
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC 60
           MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
Sbjct: 1   MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC 60

Query: 61  VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL 120
           VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL
Sbjct: 61  VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL 120

Query: 121 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP 161
           FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
Sbjct: 121 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP 161


>gi|4505181 microsomal glutathione S-transferase 2 [Homo sapiens]
          Length = 147

 Score = 84.7 bits (208), Expect = 3e-17
 Identities = 48/129 (37%), Positives = 67/129 (51%)

Query: 7   GNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNCVDAYPT 66
           GN +LLA V+++S  Q  +FA +V              TG+  FERV+ A QNCV+ YP 
Sbjct: 3   GNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFYPI 62

Query: 67  FLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIILFLFLMS 126
           F+  LW AG   +QV A   GL+Y++ R  YF GY     +   G+     I+  L L+ 
Sbjct: 63  FIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTLLG 122

Query: 127 VAGIFNYYL 135
             GI N +L
Sbjct: 123 ALGIANSFL 131


>gi|22035629 leukotriene C4 synthase [Homo sapiens]
          Length = 150

 Score = 77.8 bits (190), Expect = 4e-15
 Identities = 45/127 (35%), Positives = 62/127 (48%)

Query: 9   VVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNCVDAYPTFL 68
           V LLA VTL+ V+   +F+ +V    R         TG   FERVY A  NC + +P FL
Sbjct: 5   VALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLFL 64

Query: 69  AVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIILFLFLMSVA 128
           A LW AG+   +  AA  GL+YLF R +YF GY               R +  L  ++  
Sbjct: 65  ATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAAL 124

Query: 129 GIFNYYL 135
           G+  ++L
Sbjct: 125 GLLAHFL 131


>gi|4758714 microsomal glutathione S-transferase 3 [Homo sapiens]
          Length = 152

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 50  FERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVG-YLGERTQS 108
           F  +  A+QN ++ YP FL  L   G+   ++ A+  GL ++  R  Y  G Y GE ++ 
Sbjct: 54  FNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRI-ASGLGLAWIVGRVLYAYGYYTGEPSKR 112

Query: 109 TPGYIFGKRIILFLFLMSVAGIFNY 133
           + G + G   +L L   +V   F +
Sbjct: 113 SRGAL-GSIALLGLVGTTVCSAFQH 136


>gi|21362112 limb region 1 protein [Homo sapiens]
          Length = 490

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 102 LGERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGS-----DFENYIKTISTTISP 156
           +G  + ST G++     I+ +F + V+ +  +Y + FFG+     D     K I   +S 
Sbjct: 335 IGNASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSI 394

Query: 157 LLL 159
           L+L
Sbjct: 395 LVL 397


>gi|32967300 C1q and tumor necrosis factor related protein 6 [Homo
           sapiens]
          Length = 278

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 22  QNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNCVD 62
           Q  FFA  V  ++   +G  FQ   TL FERV+     C D
Sbjct: 140 QKRFFAFSVGRKTALHSGEDFQ---TLLFERVFVNLDGCFD 177


>gi|32967294 C1q and tumor necrosis factor related protein 6 [Homo
           sapiens]
          Length = 278

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 22  QNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNCVD 62
           Q  FFA  V  ++   +G  FQ   TL FERV+     C D
Sbjct: 140 QKRFFAFSVGRKTALHSGEDFQ---TLLFERVFVNLDGCFD 177


>gi|148612887 choline transporter-like protein 4 [Homo sapiens]
          Length = 710

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 7   GNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNCVDAYPT 66
           G +VL+ I+ ++ V+  G +    E+      G S  + G       +T N   + AY +
Sbjct: 255 GPLVLVLILGVLGVLAYGIYYCWEEYRVLRDKGASISQLG-------FTTN---LSAYQS 304

Query: 67  FLAVLWSAGLLCSQVPAAFAGLMYLFVRQK 96
            +   W A L+   V  A   LM +F+RQ+
Sbjct: 305 -VQETWLAALIVLAVLEAILLLMLIFLRQR 333


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,205,291
Number of Sequences: 37866
Number of extensions: 195261
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.