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Search of human proteins with 156564367
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156564367 hypothetical protein LOC113802 [Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156564367 hypothetical protein LOC113802 [Homo sapiens] 801 0.0
gi|156564365 hypothetical protein LOC113802 [Homo sapiens] 801 0.0
gi|63253298 spermidine synthase [Homo sapiens] 31 2.2
gi|92859575 methyltransferase like 5 [Homo sapiens] 31 2.2
gi|62526045 zinc finger protein 638 [Homo sapiens] 30 2.9
gi|21626468 zinc finger protein 638 [Homo sapiens] 30 2.9
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 30 3.8
gi|113420756 PREDICTED: hypothetical protein [Homo sapiens] 29 6.4
gi|110578649 cache domain containing 1 [Homo sapiens] 29 6.4
gi|70980549 programmed cell death 11 [Homo sapiens] 29 8.4
>gi|156564367 hypothetical protein LOC113802 [Homo sapiens]
Length = 393
Score = 801 bits (2069), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 60
MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
Sbjct: 1 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 60
Query: 61 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 120
LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
Sbjct: 61 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 120
Query: 121 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 180
RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
Sbjct: 121 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 180
Query: 181 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 240
HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
Sbjct: 181 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 240
Query: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 300
LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
Sbjct: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 300
Query: 301 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 360
PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
Sbjct: 301 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 360
Query: 361 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 393
MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
Sbjct: 361 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 393
>gi|156564365 hypothetical protein LOC113802 [Homo sapiens]
Length = 393
Score = 801 bits (2069), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 60
MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
Sbjct: 1 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS 60
Query: 61 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 120
LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
Sbjct: 61 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS 120
Query: 121 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 180
RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
Sbjct: 121 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD 180
Query: 181 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 240
HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
Sbjct: 181 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC 240
Query: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 300
LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
Sbjct: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK 300
Query: 301 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 360
PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
Sbjct: 301 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE 360
Query: 361 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 393
MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
Sbjct: 361 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF 393
>gi|63253298 spermidine synthase [Homo sapiens]
Length = 302
Score = 30.8 bits (68), Expect = 2.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 42 LVDQHEPKKVADLGCGDTSLLRLLKVNPCIELLVGVDINEDKLR 85
L P+KV +G GD +LR + +P +E +V +I+ED ++
Sbjct: 88 LCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQ 131
>gi|92859575 methyltransferase like 5 [Homo sapiens]
Length = 209
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 39 VKNLVDQHEPKKVADLGCGDTSLLRLLKVNPCIELLVGVDINEDKL 84
+ N D E K VADLGCG +L + L VG DI+ED L
Sbjct: 43 IHNTYDDIENKVVADLGCG-CGVLSIGTAMLGAGLCVGFDIDEDAL 87
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 30.4 bits (67), Expect = 2.9
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLP---RRKEQAGER 297
+++ +Q V + + + P ++ F L++ VSQQ R+ H P G R
Sbjct: 311 VNQSINQTVSQTMSQSLIPPSMNQQPFSSELISSVSQQE---RIPHEPVINSSNVHVGSR 367
Query: 298 GDKPKDIGGSKAPVPC-FG-------PVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAY 349
G K + P+ FG P F+ + K++ PTP + D ++ R+ +
Sbjct: 368 GSKKNYQSQADIPIRSPFGIVKASWLPKFSHADAQKMKRLPTPSMMND-YYAASPRI--F 424
Query: 350 PKLNRLC 356
P L LC
Sbjct: 425 PHLCSLC 431
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 30.4 bits (67), Expect = 2.9
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 241 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLP---RRKEQAGER 297
+++ +Q V + + + P ++ F L++ VSQQ R+ H P G R
Sbjct: 311 VNQSINQTVSQTMSQSLIPPSMNQQPFSSELISSVSQQE---RIPHEPVINSSNVHVGSR 367
Query: 298 GDKPKDIGGSKAPVPC-FG-------PVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAY 349
G K + P+ FG P F+ + K++ PTP + D ++ R+ +
Sbjct: 368 GSKKNYQSQADIPIRSPFGIVKASWLPKFSHADAQKMKRLPTPSMMND-YYAASPRI--F 424
Query: 350 PKLNRLC 356
P L LC
Sbjct: 425 PHLCSLC 431
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 30.0 bits (66), Expect = 3.8
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 158 IVISTPNSEFNPLFPSVTLRDSDHKFEWTRMEFQTWALYVA-NRYDYSVEFTGVGEPPAG 216
+ ++TP + FP LR + W + Q LY+A ++ EF G P
Sbjct: 743 VQVATPALNLSVRFPIPDLRSDQERGPWFKKSLQKEILYLAFTDLEFKTEFIGGSTPEQI 802
Query: 217 AENVGYCTQIGIFRKNGG 234
+ + IG F++ G
Sbjct: 803 KLELTFRELIGSFQEEKG 820
>gi|113420756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 29.3 bits (64), Expect = 6.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 289 RRKEQAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTP 332
+R+ G+ GDK + GGS P +G T ++ NSP P
Sbjct: 74 QRRGAVGKHGDKRRKEGGSGKP-KAYGTAITRRNPIQVLNSPDP 116
>gi|110578649 cache domain containing 1 [Homo sapiens]
Length = 1223
Score = 29.3 bits (64), Expect = 6.4
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 135 EHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSDHKFEW-TRMEFQTW 193
EHL + R E YLS + +I+ P +F+ + + S EW T+ME +
Sbjct: 616 EHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFS--VRNEVMATSHVTDEWMTQMEMSSL 673
Query: 194 ALYVANRY 201
Y+ RY
Sbjct: 674 NTYIVRRY 681
>gi|70980549 programmed cell death 11 [Homo sapiens]
Length = 1871
Score = 28.9 bits (63), Expect = 8.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 50 KVADLGCGDTSLLRLLKVNPCIELLVGV 77
+++D G GD ++ LL +N C+E L GV
Sbjct: 798 RLSDCGLGDLAITSLLLLNQCLEELQGV 825
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,486,669
Number of Sequences: 37866
Number of extensions: 693689
Number of successful extensions: 1450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 13
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.