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Search of human proteins with 156416022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156416022 transmembrane protein 176B isoform b [Homo
sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156416022 transmembrane protein 176B isoform b [Homo sapiens] 464 e-131
gi|156416020 transmembrane protein 176B isoform a [Homo sapiens] 446 e-125
gi|156416018 transmembrane protein 176B isoform a [Homo sapiens] 446 e-125
gi|156416016 transmembrane protein 176B isoform a [Homo sapiens] 446 e-125
gi|156416014 transmembrane protein 176B isoform a [Homo sapiens] 446 e-125
gi|32484987 hepatocellular carcinoma-associated antigen 112 [Hom... 67 1e-11
gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens] 33 0.16
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 31 0.79
gi|90903231 huntingtin [Homo sapiens] 30 1.8
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 28 5.2
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 28 6.7
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 28 8.8
gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens] 28 8.8
>gi|156416022 transmembrane protein 176B isoform b [Homo sapiens]
Length = 233
Score = 464 bits (1194), Expect = e-131
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 61 GYEQLALGVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPF 120
GYEQLALGVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPF
Sbjct: 61 GYEQLALGVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPF 120
Query: 121 LYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLK 180
LYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLK
Sbjct: 121 LYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLK 180
Query: 181 VIVSLVSLGVGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
VIVSLVSLGVGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAIVL
Sbjct: 181 VIVSLVSLGVGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
>gi|156416020 transmembrane protein 176B isoform a [Homo sapiens]
Length = 270
Score = 446 bits (1146), Expect = e-125
Identities = 233/270 (86%), Positives = 233/270 (86%), Gaps = 37/270 (13%)
Query: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 61 GYEQLALGV-------------------------------------IAAGAGAIVHEKHP 83
GYEQLALGV IAAGAGAIVHEKHP
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 84 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 143
GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 144 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 203
RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 204 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
NEEGSEKRLLGENSVPPSPSREQTSTAIVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>gi|156416018 transmembrane protein 176B isoform a [Homo sapiens]
Length = 270
Score = 446 bits (1146), Expect = e-125
Identities = 233/270 (86%), Positives = 233/270 (86%), Gaps = 37/270 (13%)
Query: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 61 GYEQLALGV-------------------------------------IAAGAGAIVHEKHP 83
GYEQLALGV IAAGAGAIVHEKHP
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 84 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 143
GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 144 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 203
RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 204 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
NEEGSEKRLLGENSVPPSPSREQTSTAIVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>gi|156416016 transmembrane protein 176B isoform a [Homo sapiens]
Length = 270
Score = 446 bits (1146), Expect = e-125
Identities = 233/270 (86%), Positives = 233/270 (86%), Gaps = 37/270 (13%)
Query: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 61 GYEQLALGV-------------------------------------IAAGAGAIVHEKHP 83
GYEQLALGV IAAGAGAIVHEKHP
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 84 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 143
GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 144 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 203
RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 204 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
NEEGSEKRLLGENSVPPSPSREQTSTAIVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>gi|156416014 transmembrane protein 176B isoform a [Homo sapiens]
Length = 270
Score = 446 bits (1146), Expect = e-125
Identities = 233/270 (86%), Positives = 233/270 (86%), Gaps = 37/270 (13%)
Query: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 61 GYEQLALGV-------------------------------------IAAGAGAIVHEKHP 83
GYEQLALGV IAAGAGAIVHEKHP
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 84 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 143
GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 144 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 203
RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 204 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 233
NEEGSEKRLLGENSVPPSPSREQTSTAIVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>gi|32484987 hepatocellular carcinoma-associated antigen 112 [Homo
sapiens]
Length = 235
Score = 67.4 bits (163), Expect = 1e-11
Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 38/208 (18%)
Query: 13 MASRPSQPTHVNVHIHQESALTQLL------------KAGGS------------------ 42
MA Q TH++VHIHQESAL +LL +A GS
Sbjct: 9 MAPEAPQHTHIDVHIHQESALAKLLLTCCSALRPRATQARGSSRLLVASWVMQIVLGILS 68
Query: 43 --LKKFLFHPGDTVPSTARIGYEQLALGVIAAGAGAIVHEKHPGKLAGYISSLLTLAGFA 100
L F + T+ T+ A+ V+A GA A ++EK G + +LLTLA F+
Sbjct: 69 AVLGGFFYIRDYTLLVTSGAAIWTGAVAVLA-GAAAFIYEKRGGTYWALLRTLLTLAAFS 127
Query: 101 TAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMRRSQENQWQKEECRAYMQ 160
TA+AA+ L F + + + SD P +S E + C ++M
Sbjct: 128 TAIAALKLWNEDFRYGYSYYNSACRISSSSDWNTPAP-----TQSPEEVRRLHLCTSFMD 182
Query: 161 MLRKLFTAIRALFLAVCVLKVIVSLVSL 188
ML+ LF ++A+ L V +L ++ SL L
Sbjct: 183 MLKALFRTLQAMLLGVWILLLLASLTPL 210
>gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]
Length = 1393
Score = 33.5 bits (75), Expect = 0.16
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 8 VNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLAL 67
+ G +A PTH+ +H H E A +AG SL++ LFH + S R LAL
Sbjct: 361 LQGELLAPDVDLPTHLGLHHHGEEA----ERAGYSLQE-LFHLTRSQVSQQR----ALAL 411
Query: 68 GVIAAGAGAIVHEKHPGKLAGYISSLLTLAGF 99
V+A + +LAG + SLL AGF
Sbjct: 412 HVLAQVISRAQAGEFGDRLAGSVLSLLLDAGF 443
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 31.2 bits (69), Expect = 0.79
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 17 PSQPTHVNVHIHQESALTQLLKAGGSLKKFLF-HPGDT 53
P+QP+ H + E A T L+KAGG+ +F HP +
Sbjct: 1235 PNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSS 1272
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 146 QENQWQKEECRAYMQMLRKLFT-AIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSS-QPL 203
QE W RA + M+ +LF+ ++ + + VL + ++ L +L S P+
Sbjct: 1124 QEEVWPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPI 1183
Query: 204 NEEGSEKRLLGENSVPPSPSREQTSTA 230
+G EK + SVP SP + ++A
Sbjct: 1184 RRKGKEKEPGEQASVPLSPKKGSEASA 1210
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 28.5 bits (62), Expect = 5.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 146 QENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPLNE 205
Q+N+ Q+E+ +Q KL L + ++ +V LR +CG Q +
Sbjct: 118 QKNKEQEEQLGEMIQAYEKLCVEKSDLETELREMRALVE-----THLRQICGLEQQLRQQ 172
Query: 206 EGSEKRLLGENSVPPSPS 223
+G + S PP+P+
Sbjct: 173 QGLQDAAFSNLSPPPAPA 190
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 190 VGLRNLCGQSSQPLNEEGSEKRLLGENSVPPSPSREQTSTAI 231
VG R + G+ L E ++R+LGE S PSPS ++ + +
Sbjct: 796 VGERRILGKEGATL--EPKQQRILGEESGAPSPSPQKHGSLV 835
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 27.7 bits (60), Expect = 8.8
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 27 IHQESALTQLLKAGGSLKKFLFHPGDTVPSTARIGYEQLALGVIAAG-AGAIVHEKHPGK 85
+HQ AL L + G+ +L GD VP+ R LGV+A G G IV E+
Sbjct: 11 LHQ--ALRGALDSLGTFVSYLL--GDAVPTVEREAQAAEELGVVAVGKTGKIVEEEAQED 66
Query: 86 LAG 88
L G
Sbjct: 67 LEG 69
>gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]
Length = 781
Score = 27.7 bits (60), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 46 FLFHPGDTVPSTARIGYEQLALGVIAAGAGA 76
F PGD + AR+ E+ A+ AAGA A
Sbjct: 51 FPLEPGDAATAAARVSGEEGAVAAAAAGAAA 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,001,876
Number of Sequences: 37866
Number of extensions: 367824
Number of successful extensions: 1046
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 18
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.