Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM176B Sequence: fasta or formatted (270aa) NCBI GI: 156416020
Description:

transmembrane protein 176B isoform a

Referenced in:

Liver

Other entries for this name:
alt mRNA [270aa] transmembrane protein 176B isoform a
alt mRNA [270aa] transmembrane protein 176B isoform a
alt mRNA [270aa] transmembrane protein 176B isoform a
alt prot [233aa] transmembrane protein 176B isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         24           2
 C cysteine            3.0          8           1
 D aspartate           1.5          4           1
 E glutamate           4.4         12           2
 F phenylalanine       3.3          9           1
 G glycine             8.1         22           2
 H histidine           2.2          6           1
 I isoleucine          4.4         12           1
 K lysine              3.3          9           2
 L leucine            11.9         32           2
 M methionine          2.2          6           1
 N asparagine          3.0          8           1
 P proline             4.8         13           2
 Q glutamine           5.2         14           1
 R arginine            4.4         12           2
 S serine              8.9         24           2
 T threonine           6.3         17           2
 V valine             10.4         28           2
 W tryptophan          1.9          5           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 176B isoform a 
TMEM176B              1.000   transmembrane protein 176B isoform a 
TMEM176B              1.000   transmembrane protein 176B isoform a 
TMEM176B              1.000   transmembrane protein 176B isoform a 
TMEM176B              0.819   transmembrane protein 176B isoform b 
TMEM176A              0.158   hepatocellular carcinoma-associated antigen 112 [Hom...
FAM189B               0.027   hypothetical protein LOC10712 isoform a 
FAM189A1              0.019   hypothetical protein LOC23359 
KIAA0913              0.012   hypothetical protein LOC23053 
MS4A5                 0.012   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A12                0.012   membrane-spanning 4-domains, subfamily A, member 12 [...
HTT                   0.010   huntingtin 
MS4A15                0.008   membrane-spanning 4-domains, subfamily A, member 15...
TBKBP1                0.006   TBK1 binding protein 1 
MS4A14                0.006   membrane-spanning 4-domains, subfamily A, member 14...
TAOK2                 0.006   TAO kinase 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press